Hierarchy For All Packages

Package Hierarchies:

• edu.cmu.tetrad.algcomparison,
• edu.cmu.tetrad.algcomparison.algorithm,
• edu.cmu.tetrad.algcomparison.algorithm.cluster,
• edu.cmu.tetrad.algcomparison.algorithm.continuous.dag,
• edu.cmu.tetrad.algcomparison.algorithm.mixed,
• edu.cmu.tetrad.algcomparison.algorithm.multi,
• edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag,
• edu.cmu.tetrad.algcomparison.algorithm.oracle.pag,
• edu.cmu.tetrad.algcomparison.algorithm.other,
• edu.cmu.tetrad.algcomparison.algorithm.pairwise,
• edu.cmu.tetrad.algcomparison.examples,
• edu.cmu.tetrad.algcomparison.graph,
• edu.cmu.tetrad.algcomparison.independence,
• edu.cmu.tetrad.algcomparison.score,
• edu.cmu.tetrad.algcomparison.simulation,
• edu.cmu.tetrad.algcomparison.statistic,
• edu.cmu.tetrad.algcomparison.statistic.utils,
• edu.cmu.tetrad.algcomparison.utils,
• edu.cmu.tetrad.annotation,
• edu.cmu.tetrad.bayes,
• edu.cmu.tetrad.calculator,
• edu.cmu.tetrad.calculator.expression,
• edu.cmu.tetrad.calculator.parser,
• edu.cmu.tetrad.calibration,
• edu.cmu.tetrad.classify,
• edu.cmu.tetrad.cluster,
• edu.cmu.tetrad.cluster.metrics,
• edu.cmu.tetrad.data,
• edu.cmu.tetrad.data.simulation,
• edu.cmu.tetrad.graph,
• edu.cmu.tetrad.regression,
• edu.cmu.tetrad.search,
• edu.cmu.tetrad.search.score,
• edu.cmu.tetrad.search.test,
• edu.cmu.tetrad.search.utils,
• edu.cmu.tetrad.search.work_in_progress,
• edu.cmu.tetrad.sem,
• edu.cmu.tetrad.simulation,
• edu.cmu.tetrad.stat,
• edu.cmu.tetrad.stat.correlation,
• edu.cmu.tetrad.study,
• edu.cmu.tetrad.study.examples.conditions,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin,
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util,
• edu.cmu.tetrad.study.gene.tetrad.gene.graph,
• edu.cmu.tetrad.study.gene.tetrad.gene.history,
• edu.cmu.tetrad.study.gene.tetrad.gene.simexp,
• edu.cmu.tetrad.study.gene.tetrad.gene.simulation,
• edu.cmu.tetrad.study.gene.tetrad.gene.util,
• edu.cmu.tetrad.study.gene.tetradapp.model,
• edu.cmu.tetrad.study.performance,
• edu.cmu.tetrad.util,
• edu.cmu.tetrad.util.dist,
• edu.pitt.csb.mgm,
• edu.pitt.csb.stability,
• edu.pitt.dbmi.algo.bayesian.constraint.inference,
• edu.pitt.dbmi.algo.bayesian.constraint.search,
• edu.pitt.dbmi.algo.resampling,
• edu.pitt.isp.sverchkov.data

Class Hierarchy

• java.lang.Object
  • edu.cmu.tetrad.annotation.AbstractAnnotations<T>
    • edu.cmu.tetrad.annotation.AlgorithmAnnotations
    • edu.cmu.tetrad.annotation.ScoreAnnotations
    • edu.cmu.tetrad.annotation.TestOfIndependenceAnnotations
  • edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Bfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Boss (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.BossDumb (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.BossLingam (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.BossPag (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Ccd (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Cfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Cpc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.Dagma (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.DirectLingam (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.Eb (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.other.FactorAnalysis (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Fas (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.Fask (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.FaskOrig (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.FaskPw (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Fci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.FciMax (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Fges (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.FgesMb (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.FgesMeasurement (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs)
    • edu.cmu.tetrad.algcomparison.algorithm.cluster.Fofc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.cluster.ClusterAlgorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix)
    • edu.cmu.tetrad.algcomparison.algorithm.cluster.Ftfc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.cluster.ClusterAlgorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Gfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.other.Glasso (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Grasp (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.GraspFci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.IcaLingam (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs)
    • edu.cmu.tetrad.algcomparison.algorithm.continuous.dag.IcaLingD (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.LvLite (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.mixed.Mgm (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.PagSampleRfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Pc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Pcd (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.PcMb (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.R1 (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.R2 (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.R3 (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.RestrictedBoss (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Rfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.RfciBsc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.Rskew (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.RskewE (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.Skew (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.SkewE (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Sp (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.SpFci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.SvarFci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.SvarGfci (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
    • edu.cmu.tetrad.algcomparison.algorithm.pairwise.Tanh (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph)
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • edu.cmu.tetrad.data.DataModelList (implements edu.cmu.tetrad.data.DataModel)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.AbstractNbComponent (implements edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbComponent)
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbFunction
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbFunctionAnd
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbFunctionOr
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbFunctionSum
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbFunctionSV
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbGene
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbGeneAnd
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbGeneOr
  • edu.cmu.tetrad.data.AbstractVariable (implements edu.cmu.tetrad.data.Variable)
    • edu.cmu.tetrad.data.ContinuousVariable (implements edu.cmu.tetrad.data.Variable)
    • edu.cmu.tetrad.data.DiscreteVariable (implements edu.cmu.tetrad.graph.Node)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.ActiveLagGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.LagGraph)
  • edu.cmu.tetrad.algcomparison.statistic.utils.AdjacencyConfusion
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyFn (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyFp (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyFpr (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyTn (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyTp (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AdjacencyTpr (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.utils.AdTree
  • edu.pitt.isp.sverchkov.data.AdTree<A,V>
  • edu.pitt.isp.sverchkov.data.AdTreeTest
  • edu.cmu.tetrad.util.AlgorithmDescriptions
  • edu.cmu.tetrad.algcomparison.algorithm.AlgorithmFactory
  • edu.cmu.tetrad.algcomparison.algorithm.Algorithms (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.utils.AlmostCycleRemover (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.statistic.AncestorF1 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AncestorPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AncestorRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AncestralPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AncestralRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.data.AndersonDarlingTest
  • edu.cmu.tetrad.annotation.AnnotatedClass<T> (implements java.io.Serializable)
  • edu.cmu.tetrad.annotation.AnnotatedClassUtils
  • edu.cmu.tetrad.bayes.ApproximateUpdater (implements edu.cmu.tetrad.bayes.ManipulatingBayesUpdater)
  • edu.cmu.tetrad.algcomparison.statistic.utils.ArrowConfusion
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadFn (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadFp (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadFpr (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadPrecisionCommonEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadRecallCommonEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadTn (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ArrowheadTp (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestBooleanFunction
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestIndexedConnectivity
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestIndexedLagGraph
      • edu.cmu.tetrad.study.gene.tetrad.gene.simulation.TestMeasurementSimulator
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestPolynomial
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestPolynomialTerm
      • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal.TestRevealEvaluator
      • edu.cmu.tetrad.study.gene.tetrad.gene.history.TestSimpleRandomizer
  • edu.cmu.tetrad.algcomparison.statistic.AverageDegreeEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.AverageDegreeTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.BasalInitializer (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.Initializer)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.BasicGraph
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua.Digraph
      • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua.BiolinguaDigraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.OutputGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.BasicLagGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.LagGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.BasicMatrix
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.BasicLTMatrix
      • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.LTMatrix
        • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.SymMatrix
      • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.LTMatrixF
        • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.SymMatrixF
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.Matrix
    • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.MatrixF
  • edu.cmu.tetrad.algcomparison.score.BasisFunctionBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.BasisFunctionBicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.independence.BasisFunctionBicTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.bayes.BayesBifParser
  • edu.cmu.tetrad.bayes.BayesBifRenderer
  • edu.pitt.dbmi.algo.bayesian.constraint.inference.BayesianConstraintInference
  • edu.pitt.dbmi.algo.bayesian.constraint.inference.BayesianConstraintInferenceTest
  • edu.cmu.tetrad.search.utils.BayesImParser
  • edu.cmu.tetrad.bayes.BayesImProbs (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.BayesNetSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.bayes.BayesPm (implements edu.cmu.tetrad.util.Pm, edu.cmu.tetrad.data.VariableSource)
  • edu.cmu.tetrad.bayes.BayesProperties
  • edu.cmu.tetrad.bayes.BayesProperties.LikelihoodRet
  • edu.cmu.tetrad.bayes.BayesXmlParser
  • edu.cmu.tetrad.bayes.BayesXmlRenderer
  • edu.pitt.dbmi.algo.bayesian.constraint.inference.BCCausalInference
  • edu.pitt.dbmi.algo.bayesian.constraint.inference.BCInference
  • edu.cmu.tetrad.bayes.BdeMetricCache
  • edu.cmu.tetrad.search.score.BdeScore (implements edu.cmu.tetrad.search.score.DiscreteScore)
  • edu.cmu.tetrad.algcomparison.score.BdeuScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.BdeuScore (implements edu.cmu.tetrad.search.score.DiscreteScore)
  • edu.cmu.tetrad.algcomparison.independence.BdeuTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.utils.Bes
  • edu.cmu.tetrad.search.utils.Bes.Arrow (implements java.lang.Comparable<T>)
  • edu.cmu.tetrad.search.utils.BesPermutation
  • edu.cmu.tetrad.util.dist.Beta (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.search.BFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.statistic.BicDiff (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BicDiffPerRecord (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BicEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BicTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.utils.BidirectedConfusion
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedFP (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedLatentPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedTP (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.BidirectedTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua.Biolingua
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua.BiolinguaRunner
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.BooleanFunction (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.BooleanGlassFunction (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.UpdateFunction)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu.BoolSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.BoolSearch
  • edu.cmu.tetrad.data.BootstrapSampler
  • edu.cmu.tetrad.search.Boss (implements edu.cmu.tetrad.search.SuborderSearch)
  • edu.cmu.tetrad.search.BossLingam
  • edu.cmu.tetrad.data.BoxDataSet (implements edu.cmu.tetrad.data.DataSet)
  • edu.cmu.tetrad.algcomparison.algorithm.cluster.Bpc (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.algorithm.cluster.ClusterAlgorithm, edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix)
  • edu.cmu.tetrad.search.Bpc
  • edu.cmu.tetrad.search.work_in_progress.BpcTetradPurifyWashdown
  • edu.cmu.tetrad.study.examples.conditions.BryanSensitivityStudy
  • edu.cmu.tetrad.data.ByteDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.data.CaseExpander (implements edu.cmu.tetrad.data.DataFilter)
  • edu.cmu.tetrad.search.Ccd (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.independence.CciTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.data.CellTableAdTree (implements edu.cmu.tetrad.data.CellTable)
  • edu.cmu.tetrad.data.CellTableCountSample (implements edu.cmu.tetrad.data.CellTable)
  • edu.cmu.tetrad.bayes.CellTableProbs
  • edu.cmu.tetrad.search.Cfci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.CheckKnowledge
  • edu.cmu.tetrad.algcomparison.independence.ChiSquare (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.util.dist.ChiSquare (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.search.test.ChiSquareTest
  • edu.cmu.tetrad.search.test.ChiSquareTest.Result
  • edu.cmu.tetrad.util.ChoiceGenerator
  • edu.cmu.tetrad.classify.ClassifierBayesUpdaterDiscrete (implements edu.cmu.tetrad.classify.ClassifierDiscrete, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.classify.ClassifierMbDiscrete (implements edu.cmu.tetrad.classify.ClassifierDiscrete)
  • edu.cmu.tetrad.data.Clusters (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.utils.ClusterSignificance
  • edu.cmu.tetrad.search.utils.ClusterUtils
  • edu.cmu.tetrad.util.CombinationGenerator
  • edu.cmu.tetrad.util.CombinationIterator (implements java.util.Iterator<E>)
  • edu.cmu.tetrad.algcomparison.statistic.CommonAncestorFalseNegativeBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.CommonAncestorFalsePositiveBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.CommonAncestorTruePositiveBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.CommonMeasuredAncestorRecallBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.CompareTwoGraphs
  • edu.cmu.tetrad.algcomparison.Comparison (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.performance.Comparison
  • edu.cmu.tetrad.study.performance.Comparison2
  • edu.cmu.tetrad.study.performance.ComparisonParameters
  • edu.cmu.tetrad.study.performance.ComparisonResult
  • edu.cmu.tetrad.study.performance.ComparisonScript
  • edu.cmu.tetrad.search.CompositeIndependenceTest (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.ConditionalCorrelationIndependence (implements edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.algcomparison.score.ConditionalGaussianBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.ConditionalGaussianLikelihood
  • edu.cmu.tetrad.search.score.ConditionalGaussianLikelihood.Ret
  • edu.cmu.tetrad.algcomparison.independence.ConditionalGaussianLRT (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.score.ConditionalGaussianScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.simulation.ConditionalGaussianSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.calculator.expression.ConstantExpression (implements edu.cmu.tetrad.calculator.expression.Expression)
  • edu.cmu.tetrad.data.ContinuousDiscretizationSpec (implements edu.cmu.tetrad.data.DiscretizationSpec, edu.cmu.tetrad.util.TetradSerializable)
  • edu.pitt.csb.mgm.ConvexProximal
    • edu.pitt.csb.mgm.Mgm (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.statistic.CorrectSkeleton (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.data.CorrelationMatrixOnTheFly (implements edu.cmu.tetrad.data.ICovarianceMatrix)
  • edu.cmu.tetrad.data.CovarianceMatrix (implements edu.cmu.tetrad.data.ICovarianceMatrix)
    • edu.cmu.tetrad.data.CorrelationMatrix
  • edu.cmu.tetrad.stat.correlation.CovarianceMatrix (implements edu.cmu.tetrad.stat.correlation.Covariance)
  • edu.cmu.tetrad.data.CovarianceMatrixOnTheFly (implements edu.cmu.tetrad.data.ICovarianceMatrix)
  • edu.cmu.tetrad.data.CovariancesDoubleForkJoin
  • edu.cmu.tetrad.search.Cpc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.CpdagParentDistancesFromTrue
  • edu.cmu.tetrad.bayes.CptInvariantMarginalCalculator (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.bayes.CptInvariantUpdater (implements edu.cmu.tetrad.bayes.ManipulatingBayesUpdater)
  • edu.cmu.tetrad.bayes.CptMapCounts (implements edu.cmu.tetrad.bayes.CptMap)
  • edu.cmu.tetrad.bayes.CptMapProbs (implements edu.cmu.tetrad.bayes.CptMap)
  • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.Cstar (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
  • edu.cmu.tetrad.search.Cstar
  • edu.cmu.tetrad.search.Cstar.Record (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.CutoffFinder
  • edu.cmu.tetrad.algcomparison.graph.Cyclic (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.graph.Dag (implements edu.cmu.tetrad.graph.Graph)
  • edu.cmu.tetrad.search.utils.DagInCpcagIterator
  • edu.cmu.tetrad.search.utils.DagIterator
  • edu.cmu.tetrad.search.Dagma
  • edu.cmu.tetrad.sem.DagScorer (implements edu.cmu.tetrad.sem.Scorer, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.utils.DagSepsets (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.DagToPag
  • edu.cmu.tetrad.util.DataConvertUtils
  • edu.cmu.tetrad.calibration.DataForCalibrationRfci
  • edu.pitt.csb.stability.DataGraphSearch
    • edu.pitt.csb.stability.SearchWrappers.FgesWrapper
    • edu.pitt.csb.stability.SearchWrappers.MGMWrapper
    • edu.pitt.csb.stability.SearchWrappers.PcStableWrapper
  • edu.cmu.tetrad.data.DataGraphUtils
  • edu.cmu.tetrad.data.DataSampling
  • edu.cmu.tetrad.bayes.DataSetProbs
  • edu.pitt.isp.sverchkov.data.DataTableImpl<N,V> (implements edu.pitt.isp.sverchkov.data.DataTable<N,V>)
  • edu.pitt.isp.sverchkov.data.DataTools
  • edu.cmu.tetrad.data.DataTransforms
  • edu.cmu.tetrad.util.DataUtility
  • edu.cmu.tetrad.data.DataUtils
  • edu.cmu.tetrad.data.DataWriter
  • edu.cmu.tetrad.search.work_in_progress.Dci
  • edu.cmu.tetrad.search.utils.DefaultSetEndpointStrategy (implements edu.cmu.tetrad.search.utils.SetEndpointStrategy)
  • edu.cmu.tetrad.util.DefaultTetradLoggerConfig (implements edu.cmu.tetrad.util.TetradLoggerConfig)
  • edu.cmu.tetrad.util.DefaultTetradLoggerConfig.DefaultEvent (implements edu.cmu.tetrad.util.TetradLoggerConfig.Event)
  • edu.cmu.tetrad.algcomparison.statistic.DefiniteDirectedPathPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.DefiniteDirectedPathRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.score.DegenerateGaussianBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.algcomparison.independence.DegenerateGaussianLRT (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.score.DegenerateGaussianScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.data.DelimiterType (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.DelimiterUtils
  • edu.cmu.tetrad.search.utils.DeltaSextadTest
  • edu.cmu.tetrad.search.utils.DeltaTetradTest
  • edu.cmu.tetrad.search.work_in_progress.Demixer
  • edu.cmu.tetrad.search.work_in_progress.DemixerMMLKun
  • edu.cmu.tetrad.algcomparison.statistic.DensityEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.DensityTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.DirectLingam
  • edu.cmu.tetrad.bayes.DirichletBayesIm (implements edu.cmu.tetrad.bayes.BayesIm)
  • edu.cmu.tetrad.bayes.DirichletDataSetProbs
  • edu.cmu.tetrad.bayes.DirichletEstimator
  • edu.cmu.tetrad.util.dist.Discrete (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.algcomparison.score.DiscreteBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.DiscreteBicScore (implements edu.cmu.tetrad.search.score.DiscreteScore)
  • edu.cmu.tetrad.search.score.DiscreteBicScoreAdTree (implements edu.cmu.tetrad.search.score.DiscreteScore)
  • edu.cmu.tetrad.algcomparison.independence.DiscreteBicTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.data.DiscreteDiscretizationSpec (implements edu.cmu.tetrad.data.DiscretizationSpec, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.DiscreteVariableType (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.Discretizer
  • edu.cmu.tetrad.data.Discretizer.Discretization
  • edu.cmu.tetrad.search.utils.DiscriminatingPath
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.DishModel (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.DisplayNameHandler
  • edu.cmu.tetrad.search.work_in_progress.DMSearch
  • edu.cmu.tetrad.search.work_in_progress.DMSearch.LatentStructure
  • edu.cmu.tetrad.data.DoubleDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.algcomparison.score.EbicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.EbicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.graph.Edge (implements java.lang.Comparable<T>, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.graph.EdgeListGraph (implements edu.cmu.tetrad.graph.Graph, edu.cmu.tetrad.graph.TripleClassifier)
  • edu.cmu.tetrad.graph.Edges
  • edu.cmu.tetrad.graph.EdgeTypeProbability (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.pitt.csb.mgm.EigenDecomposition
  • edu.cmu.tetrad.algcomparison.statistic.ElapsedCpuTime (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.bayes.EmBayesEstimator
  • edu.cmu.tetrad.bayes.EmBayesProperties
  • edu.cmu.tetrad.sem.EmpiricalCdf (implements org.apache.commons.math3.distribution.RealDistribution)
  • edu.cmu.tetrad.sem.EmpiricalDistributionForExpression
  • edu.cmu.tetrad.search.utils.EnsureMarkov
  • edu.cmu.tetrad.calculator.expression.Equation
  • edu.cmu.tetrad.algcomparison.graph.ErdosRenyi (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.search.utils.EstimateRank
  • edu.cmu.tetrad.calculator.expression.EvaluationExpression (implements edu.cmu.tetrad.calculator.expression.Expression)
  • java.util.EventObject (implements java.io.Serializable)
    • edu.cmu.tetrad.util.TetradLoggerEvent
  • edu.cmu.tetrad.bayes.Evidence (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.examples.ExampleCompareFromFiles
  • edu.cmu.tetrad.study.examples.conditions.ExampleCompareFromFiles
  • edu.cmu.tetrad.algcomparison.examples.ExampleCompareSimulation
  • edu.cmu.tetrad.study.examples.conditions.ExampleCompareSimulation
  • edu.cmu.tetrad.algcomparison.examples.ExampleCompareSimulation2
  • edu.cmu.tetrad.study.examples.conditions.ExampleCompareSimulationDiscrete
  • edu.cmu.tetrad.algcomparison.examples.ExampleCompareSimulationTimeSeries
  • edu.cmu.tetrad.study.examples.conditions.ExampleFirstInflection
  • edu.pitt.csb.mgm.ExampleMixedSearch
  • edu.cmu.tetrad.algcomparison.examples.ExampleNonlinearSave
  • edu.cmu.tetrad.algcomparison.examples.ExampleSave
  • edu.cmu.tetrad.study.examples.conditions.ExampleSave
  • edu.cmu.tetrad.study.examples.conditions.ExampleStars
  • edu.cmu.tetrad.study.performance.ExploreComparison
  • edu.pitt.csb.mgm.ExploreIndepTests
  • edu.cmu.tetrad.util.dist.Exponential (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.calculator.parser.ExpressionLexer
  • edu.cmu.tetrad.calculator.expression.ExpressionManager
  • edu.cmu.tetrad.calculator.parser.ExpressionParser
  • edu.cmu.tetrad.algcomparison.algorithm.ExternalAlgorithm (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
  • edu.cmu.tetrad.bayes.ExtraCategoryInterpolator (implements edu.cmu.tetrad.data.DataFilter)
  • edu.cmu.tetrad.algcomparison.statistic.F1Adj (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.F1All (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.F1Arrow (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.FactorAnalysis
  • edu.cmu.tetrad.bayes.FactoredBayesStructuralEM
  • edu.cmu.tetrad.algcomparison.statistic.FalseNegativesAdjacencies (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.FalsePositiveAdjacencies (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.Fas (implements edu.cmu.tetrad.search.IFas)
  • edu.cmu.tetrad.search.Fasd (implements edu.cmu.tetrad.search.IFas)
  • edu.cmu.tetrad.search.work_in_progress.FasDci
  • edu.cmu.tetrad.search.work_in_progress.FasFdr (implements edu.cmu.tetrad.search.IFas)
  • edu.cmu.tetrad.search.Fask
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FaskConcatenated (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FaskLofsConcatenated (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm)
  • edu.cmu.tetrad.search.FaskOrig (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FaskVote (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
  • edu.cmu.tetrad.search.work_in_progress.FaskVote
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FasLofs (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge)
  • edu.cmu.tetrad.search.work_in_progress.FasLofs (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.FastIca
  • edu.cmu.tetrad.search.FastIca.IcaResult
  • edu.cmu.tetrad.algcomparison.statistic.FBetaAdj (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.Fci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FciIod (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm, edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper)
  • edu.cmu.tetrad.search.FciMax (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.utils.FciOrient
  • edu.cmu.tetrad.search.FciOrientDijkstra
  • edu.cmu.tetrad.search.FciOrientDijkstra.DijkstraEdge
  • edu.cmu.tetrad.search.FciOrientDijkstra.Graph
  • edu.cmu.tetrad.search.Fges (implements edu.cmu.tetrad.search.utils.DagScorer, edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.FgesConcatenated (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm)
  • edu.cmu.tetrad.search.FgesMb (implements edu.cmu.tetrad.search.utils.DagScorer)
  • edu.cmu.tetrad.search.utils.FgesOrienter (implements edu.cmu.tetrad.search.utils.DagScorer, edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.algorithm.FirstInflection (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
  • edu.cmu.tetrad.algcomparison.independence.FisherZ (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.score.FisherZScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.data.FloatDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.search.Fofc
  • edu.cmu.tetrad.algcomparison.statistic.FractionDependentUnderAlternative (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.FractionDependentUnderNull (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.Ftfc
  • edu.cmu.tetrad.util.dist.Gamma (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.util.dist.GaussianPower (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.simulation.Gdistance
  • edu.cmu.tetrad.simulation.GdistanceApply
  • edu.cmu.tetrad.simulation.GdistanceRandom
  • edu.cmu.tetrad.simulation.GdistanceRandomApply
  • edu.cmu.tetrad.simulation.GdistanceTest
  • edu.cmu.tetrad.simulation.GdistanceUtils
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.GeneHistory (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetradapp.model.GenePm (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.GeneralAndersonDarlingTest
  • edu.cmu.tetrad.sem.GeneralizedSemEstimator
  • edu.cmu.tetrad.sem.GeneralizedSemEstimator.MyContext (implements edu.cmu.tetrad.calculator.expression.Context)
  • edu.cmu.tetrad.sem.GeneralizedSemIm (implements edu.cmu.tetrad.util.Im, edu.cmu.tetrad.data.Simulator)
  • edu.cmu.tetrad.sem.GeneralizedSemPm (implements edu.cmu.tetrad.util.Pm, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.GeneralSemSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.algcomparison.simulation.GeneralSemSimulationSpecial1 (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.search.GFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.score.GicScores (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.GicScores (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.independence.GICScoreTests (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.work_in_progress.Glasso
  • edu.cmu.tetrad.search.work_in_progress.Glasso.Result
  • edu.cmu.tetrad.search.work_in_progress.GraphChange
  • edu.cmu.tetrad.algcomparison.statistic.GraphExactlyRight (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.utils.GraphInPag
  • edu.cmu.tetrad.graph.GraphNode (implements edu.cmu.tetrad.graph.Node)
  • edu.cmu.tetrad.search.utils.GraphoidAxioms
  • edu.cmu.tetrad.search.utils.GraphoidAxioms.GraphoidIndFact
  • edu.cmu.tetrad.util.GraphSampling
  • edu.cmu.tetrad.graph.GraphSaveLoadUtils
  • edu.cmu.tetrad.search.score.GraphScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.search.utils.GraphSearchUtils
  • edu.cmu.tetrad.search.utils.GraphSearchUtils.LegalMagRet
  • edu.cmu.tetrad.search.utils.GraphSearchUtils.LegalPagRet
  • edu.cmu.tetrad.bayes.GraphTools
  • edu.cmu.tetrad.graph.GraphTransforms
  • edu.cmu.tetrad.algcomparison.graph.GraphTypes
  • edu.cmu.tetrad.graph.GraphUtils
  • edu.cmu.tetrad.graph.GraphUtils.GraphComparison
  • edu.cmu.tetrad.graph.GraphUtils.TwoCycleErrors
  • edu.cmu.tetrad.search.Grasp
  • edu.cmu.tetrad.search.GraspFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.GraspTol
  • edu.cmu.tetrad.search.GrowShrink (implements edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.search.utils.GrowShrinkTree
  • edu.cmu.tetrad.algcomparison.independence.GSquare (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.study.gene.tetrad.gene.util.HandleyConvert
  • edu.cmu.tetrad.search.work_in_progress.HbsmsBeam (implements edu.cmu.tetrad.search.work_in_progress.Hbsms)
  • edu.cmu.tetrad.search.work_in_progress.HbsmsBeam.Move
  • edu.cmu.tetrad.search.work_in_progress.HbsmsBeam.Score
  • edu.cmu.tetrad.search.work_in_progress.HbsmsGes (implements edu.cmu.tetrad.search.work_in_progress.Hbsms)
  • edu.cmu.tetrad.search.work_in_progress.HbsmsGes.GraphWithPValue
  • edu.cmu.tetrad.search.work_in_progress.HbsmsGes.Score
  • edu.cmu.tetrad.data.Histogram
  • edu.cmu.tetrad.simulation.Hsim
  • edu.cmu.tetrad.simulation.HsimAutoC
  • edu.cmu.tetrad.simulation.HsimAutoRun
  • edu.cmu.tetrad.simulation.HsimCompareRepeat
  • edu.cmu.tetrad.simulation.HsimContinuous
  • edu.cmu.tetrad.simulation.HsimEvalFromData
  • edu.cmu.tetrad.simulation.HsimRepeatAC
  • edu.cmu.tetrad.simulation.HsimRepeatAuto
  • edu.cmu.tetrad.simulation.HsimRepeatAutoRun
  • edu.cmu.tetrad.simulation.HsimRobustCompare
  • edu.cmu.tetrad.simulation.HsimRun
  • edu.cmu.tetrad.simulation.HsimSchedule
  • edu.cmu.tetrad.simulation.HsimStudy
  • edu.cmu.tetrad.simulation.HsimStudyAuto
  • edu.cmu.tetrad.simulation.HsimUtils
  • edu.cmu.tetrad.search.utils.HungarianAlgorithm
  • edu.cmu.tetrad.search.work_in_progress.Iamb (implements edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.search.work_in_progress.IambnPc (implements edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.search.IcaLingam
  • edu.cmu.tetrad.search.IcaLingD
  • edu.cmu.tetrad.search.Ida
  • edu.cmu.tetrad.search.Ida.NodeEffects
  • edu.cmu.tetrad.algcomparison.statistic.IdaAverageSquaredDistance (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.IdaCheck
  • edu.cmu.tetrad.algcomparison.statistic.IdaCheckAvgMaxSquaredDiffEstTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.IdaCheckAvgMinSquaredDiffEstTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.IdaCheckAvgSquaredDifference (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.IdaMaximumSquaredDifference (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.IdaMinimumSquaredDifference (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.bayes.Identifiability (implements edu.cmu.tetrad.bayes.ManipulatingBayesUpdater)
  • edu.cmu.tetrad.search.work_in_progress.IGFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.Images (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
  • edu.cmu.tetrad.algcomparison.algorithm.multi.ImagesBoss (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm, edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper)
  • edu.cmu.tetrad.search.score.ImagesScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.statistic.ImpliedArrowOrientationRatioEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ImpliedArrowOrientationRatioEst2 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ImpliedOrientationRatioEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ImpliesLegalMag (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.graph.IndependenceFact (implements java.lang.Comparable<T>, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.IndependenceFacts (implements edu.cmu.tetrad.data.DataModel)
  • edu.cmu.tetrad.search.test.IndependenceResult (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.IndependenceTestDescriptions
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.IndexedConnectivity (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.IndexedLagGraph (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.IndexedMatrix
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.IndexedParent (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.dist.Indicator (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.search.test.IndTestChiSquare (implements edu.cmu.tetrad.search.EffectiveSampleSizeSettable, edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.test.IndTestConditionalCorrelation (implements edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.test.IndTestConditionalGaussianLrt (implements edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.work_in_progress.IndTestCramerT (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestDegenerateGaussianLrt (implements edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.test.IndTestDegenerateGaussianLrt.Ret
  • edu.cmu.tetrad.search.test.IndTestFisherZ (implements edu.cmu.tetrad.search.EffectiveSampleSizeSettable, edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.test.IndTestFisherZConcatenateResiduals (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestFisherZFisherPValue (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestFisherZPercentIndependent (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestFisherZRecursive (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestGSquare (implements edu.cmu.tetrad.search.EffectiveSampleSizeSettable, edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.test.IndTestHsic (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestIndependenceFacts (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.IndTestIod (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestMixedMultipleTTest (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestMnlrLr (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestMulti (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestMultinomialLogisticRegression (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.pitt.csb.mgm.IndTestMultinomialLogisticRegressionWald (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestMvpLrt (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.work_in_progress.IndTestPositiveCorr (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestProbabilistic (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestRegression (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.score.IndTestScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.search.work_in_progress.IndTestSepsetDci (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.search.test.IndTestTrekSep (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.bayes.IntAveDataSetProbs
  • edu.cmu.tetrad.data.IntDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.util.Integrator
  • edu.cmu.tetrad.search.work_in_progress.InterIamb (implements edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.search.work_in_progress.InverseCorrelation
  • edu.cmu.tetrad.search.work_in_progress.Ion
  • edu.cmu.tetrad.search.work_in_progress.IonHittingSet
  • edu.cmu.tetrad.search.work_in_progress.ISBDeuScore (implements edu.cmu.tetrad.search.work_in_progress.ISScore)
  • edu.cmu.tetrad.search.work_in_progress.ISBicScore (implements edu.cmu.tetrad.search.work_in_progress.ISScore)
  • edu.cmu.tetrad.search.work_in_progress.ISFges (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker.ItkPredictorSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker.ItkPredictorSearch.Gene (implements java.lang.Comparable<T>)
  • edu.cmu.tetrad.util.JOptionUtils
  • edu.cmu.tetrad.util.JsonUtils
  • edu.cmu.tetrad.bayes.JunctionTreeAlgorithm (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.bayes.JunctionTreeUpdater (implements edu.cmu.tetrad.bayes.ManipulatingBayesUpdater)
  • edu.cmu.tetrad.algcomparison.independence.Kci (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.test.Kci (implements edu.cmu.tetrad.search.IndependenceTest, edu.cmu.tetrad.search.test.RowsSettable)
  • edu.cmu.tetrad.search.utils.KernelGaussian (implements edu.cmu.tetrad.search.utils.Kernel)
  • edu.cmu.tetrad.search.utils.KernelUtils
  • edu.cmu.tetrad.cluster.KMeans (implements edu.cmu.tetrad.cluster.ClusteringAlgorithm)
  • edu.cmu.tetrad.data.Knowledge (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.KnowledgeEdge (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.KnowledgeGroup (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.statistic.KnowledgeSatisfied (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.work_in_progress.Kpc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.LaggedEdge (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.LaggedFactor (implements java.lang.Comparable<T>, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.graph.LagGraph (implements edu.cmu.tetrad.graph.Graph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.LagGraphParams
  • edu.cmu.tetrad.sem.LargeScaleSimulation
  • edu.cmu.tetrad.algcomparison.statistic.LatentCommonAncestorFalseNegativeBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.LatentCommonAncestorFalsePositiveBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.LatentCommonAncestorRecallBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.LatentCommonAncestorTruePositiveBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.graph.LayoutUtil
  • edu.cmu.tetrad.graph.LayoutUtil.FruchtermanReingoldLayout
  • edu.cmu.tetrad.graph.LayoutUtil.KamadaKawaiLayout
  • edu.cmu.tetrad.algcomparison.simulation.LeeHastieSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.algcomparison.statistic.LegalPag (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.simulation.LinearFisherModel (implements edu.cmu.tetrad.algcomparison.simulation.Simulation, edu.cmu.tetrad.algcomparison.utils.TakesData)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.LinearFunction (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.UpdateFunction)
  • edu.cmu.tetrad.study.gene.tetrad.gene.simexp.LinearSimExp1
  • edu.cmu.tetrad.algcomparison.simulation.LinearSineSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.study.examples.conditions.LingamStudy
  • edu.cmu.tetrad.data.simulation.LoadContinuousDataAndGraphs (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.data.simulation.LoadContinuousDataAndSingleGraph (implements edu.cmu.tetrad.algcomparison.utils.HasParameterValues, edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.data.simulation.LoadContinuousDataSmithSim (implements edu.cmu.tetrad.algcomparison.utils.HasParameterValues, edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.data.simulation.LoadDataAndGraphs (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.data.simulation.LoadDataFromFileWithoutGraph (implements edu.cmu.tetrad.algcomparison.utils.ParameterValues, edu.cmu.tetrad.algcomparison.simulation.Simulation, edu.cmu.tetrad.algcomparison.statistic.utils.SimulationPath)
  • edu.cmu.tetrad.algcomparison.statistic.utils.LocalGraphConfusion
  • edu.cmu.tetrad.algcomparison.statistic.LocalGraphPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.LocalGraphRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.Lofs
  • edu.cmu.tetrad.data.LogDataUtils
  • edu.cmu.tetrad.regression.LogisticRegression (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.regression.LogisticRegression.Result (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.dist.LogNormal (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.util.LogUtils
  • edu.cmu.tetrad.search.utils.LogUtilsSearch
  • edu.cmu.tetrad.data.LongDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu.LTestBoolSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.LTestBoolSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.biolingua.LTester
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker.LTestPredictorSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu.LTestQnet3
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.LTestReveal
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal.LTestRevealSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.LTestRevealSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu.LTestSsys1
  • edu.cmu.tetrad.search.LvDumb (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.LvLite (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.MagCgBicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.statistic.MagCgScore (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.score.MagDgBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.work_in_progress.MagDgBicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.statistic.MagDgScore (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.work_in_progress.MagSemBicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.independence.MagSemBicTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.statistic.MagSemScore (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.bayes.Manipulation (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.ManualLagGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.LagGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.ManualLagGraphParams (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.Mapping (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.MarkovCheck (implements edu.cmu.tetrad.search.EffectiveSampleSizeSettable)
  • edu.cmu.tetrad.search.MarkovCheck.AllSubsetsIndependenceFacts
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckAdPasses (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckAdPassesBestOf10 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckAndersonDarlingP (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckAndersonDarlingPBestOf10 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckBinomialP (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckBinomialPBestOf10 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckKolmogorovSmirnoffP (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckKolmogorovSmirnoffPBestOf10 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckKsPasses (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MarkovCheckKsPassesBestOf10 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MathewsCorrAdj (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MathewsCorrArrow (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.MathUtils
  • edu.cmu.tetrad.util.Matrix (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.MatrixUtils
  • edu.cmu.tetrad.algcomparison.statistic.Maximal (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.MaximalityCondition (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.utils.MaxP
  • edu.cmu.tetrad.search.utils.MbUtils
  • edu.cmu.tetrad.data.MeanInterpolator (implements edu.cmu.tetrad.data.DataFilter)
  • edu.cmu.tetrad.study.gene.tetrad.gene.simulation.MeasurementSimulator (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetradapp.model.MeasurementSimulatorParams (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.utils.MeekRules
  • edu.pitt.csb.mgm.Mgm.MGMParams
  • edu.cmu.tetrad.util.MillisecondTimes
  • edu.cmu.tetrad.search.Mimbuild
  • edu.cmu.tetrad.search.MimbuildTrek
  • edu.cmu.tetrad.search.utils.MimUtils
  • edu.cmu.tetrad.graph.MisclassificationUtils
  • edu.cmu.tetrad.data.MixedDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.pitt.csb.mgm.MixedUtils
  • edu.cmu.tetrad.search.work_in_progress.MixtureModel
  • edu.cmu.tetrad.util.dist.MixtureOfGaussians (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.bayes.MlBayesEstimator
  • edu.cmu.tetrad.bayes.MlBayesEstimatorOld
  • edu.cmu.tetrad.bayes.MlBayesIm (implements edu.cmu.tetrad.bayes.BayesIm)
  • edu.cmu.tetrad.bayes.MlBayesImObs (implements edu.cmu.tetrad.bayes.BayesIm)
  • edu.cmu.tetrad.search.work_in_progress.Mmhc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.Mmmb (implements edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.search.work_in_progress.MnlrLikelihood
  • edu.cmu.tetrad.algcomparison.independence.Mnlrlrt (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.work_in_progress.MnlrScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.bayes.ModeInterpolator (implements edu.cmu.tetrad.data.DataFilter)
  • edu.cmu.tetrad.bayes.ModelGenerator
  • edu.cmu.tetrad.algcomparison.score.MSeparationScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.algcomparison.independence.MSeparationTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.test.MsepTest (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.util.MultidataUtils
  • edu.cmu.tetrad.util.MultiDimIntTable
  • edu.cmu.tetrad.data.MultiGeneralAndersonDarlingTest
  • edu.cmu.tetrad.algcomparison.independence.MultinomialLogisticRegressionWald (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.score.MVPBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.algcomparison.examples.MVPCompareFromFiles
  • edu.cmu.tetrad.search.score.MvpLikelihood
  • edu.cmu.tetrad.algcomparison.independence.Mvplrt (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.search.score.MvpScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.util.NamingProtocol
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NetBuilderModel
  • edu.cmu.tetrad.algcomparison.simulation.NLSemSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.algcomparison.statistic.NoAlmostCyclicPathsCondition (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NoCyclicPathsCondition (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.graph.NodePair
  • edu.cmu.tetrad.algcomparison.statistic.NodesInCyclesPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NodesInCyclesRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NonancestorPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NonancestorRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.dist.Normal (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.algcomparison.statistic.NoSemidirectedF1 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NoSemidirectedPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NoSemidirectedRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.utils.NRooks
  • edu.cmu.tetrad.algcomparison.statistic.NumAmbiguousTriples (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberArrowsEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberArrowsNotInUnshieldedCollidersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberCollidersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberEdgesEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberEdgesInCollidersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberEdgesInUnshieldedCollidersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberEdgesTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.NumberFormatUtil
  • edu.cmu.tetrad.data.NumberObjectDataSet (implements edu.cmu.tetrad.data.DataSet)
  • edu.cmu.tetrad.algcomparison.statistic.NumberOfEdgesEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberOfEdgesTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberTailsEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumberUnshieldedCollidersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumBidirectedBothNonancestorAncestor (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumBidirectedEdgesEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumBidirectedEdgesTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumColoredDD (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumColoredNL (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumColoredPD (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumColoredPL (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCommonMeasuredAncestorBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatibleDefiniteDirectedEdgeAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatibleDirectedEdgeConfounded (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatibleDirectedEdgeNonAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatibleEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatiblePossiblyDirectedEdgeAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatiblePossiblyDirectedEdgeNonAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCompatibleVisibleNonancestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCorrectBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCorrectDDAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCorrectPDAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCorrectVisibleEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumCoveringAdjacenciesInPag (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDefinitelyDirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDefinitelyNotDirectedPaths (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdgeAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdgeBnaMeasuredCounfounded (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdgeNoMeasureAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdgeNotAncNotRev (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdgeReversed (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedPathsEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedPathsTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumDirectedShouldBePartiallyDirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumEdgeInEstInTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumGenuineAdjacenciesInPag (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumIncorrectDDAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumIncorrectPDAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumIncorrectVisibleAncestors (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumLatentCommonAncestorBidirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumNondirectedEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumParametersEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumPartiallyOrientedEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumPossiblyDirected (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumUndirectedEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumVisibleEdgeEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumVisibleEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.NumVisibleEdgeTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.graph.OrderedPair<E> (implements edu.cmu.tetrad.util.TetradSerializable, edu.cmu.tetrad.util.TetradSerializableExcluded)
  • edu.cmu.tetrad.algcomparison.statistic.utils.OrientationConfusion
  • edu.cmu.tetrad.algcomparison.statistic.OrientationPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.OrientationRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.PagAdjacencyPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.PagAdjacencyRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.PagCache
  • edu.pitt.dbmi.algo.bayesian.constraint.search.PagSamplingRfci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.sem.ParamConstraint (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.ParamDescription
  • edu.cmu.tetrad.util.ParamDescriptions
  • edu.cmu.tetrad.sem.Parameter (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.statistic.ParameterColumn (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.sem.ParameterPair (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.Parameters (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.ParameterUtils
  • edu.cmu.tetrad.util.Params
  • edu.cmu.tetrad.search.utils.PartialCorrelation
  • edu.cmu.tetrad.util.PartialCorrelationPdf (implements edu.cmu.tetrad.util.Function, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.graph.Paths (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.graph.Paths.AllCliquesAlgorithm
  • edu.cmu.tetrad.search.Pc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.utils.PcCommon (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.Pcd (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.PcMb (implements edu.cmu.tetrad.search.IGraphSearch, edu.cmu.tetrad.search.IMbSearch)
  • edu.cmu.tetrad.algcomparison.statistic.PercentAmbiguous (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.PercentBidirectedEdges (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.study.performance.PerformanceTests
  • edu.cmu.tetrad.study.performance.PerformanceTestsDan
  • edu.cmu.tetrad.util.PermutationGenerator
  • edu.cmu.tetrad.search.utils.PermutationMatrixPair
  • edu.cmu.tetrad.search.PermutationSearch
  • edu.cmu.tetrad.util.Point (implements java.lang.Comparable<T>)
  • edu.cmu.tetrad.util.PointXy (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.dist.Poisson (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.algcomparison.score.PoissonPriorScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.PoissonPriorScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.independence.PoissonPriorTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.Polynomial (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.PolynomialFunction (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.UpdateFunction)
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.PolynomialTerm (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.independence.PositiveCorr (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.score.PositiveCorrScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.utils.PossibleMConnectingPath
  • edu.cmu.tetrad.search.utils.PossibleMsepFci
  • edu.cmu.tetrad.simulation.PRAOerrors
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.PreviousStepOnly (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.GraphInitializer)
  • edu.cmu.tetrad.search.work_in_progress.ProbabilisticMapIndependence (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.cmu.tetrad.algcomparison.independence.ProbabilisticTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.util.ProbUtils
  • edu.cmu.tetrad.algcomparison.statistic.ProportionSemidirectedPathsNotReversedEst (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.ProportionSemidirectedPathsNotReversedTrue (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.bayes.Proposition (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.pitt.csb.mgm.ProximalGradient
  • edu.cmu.tetrad.search.utils.Purify
  • edu.cmu.tetrad.search.utils.PurifyScoreBased (implements edu.cmu.tetrad.search.utils.IPurify)
  • edu.cmu.tetrad.search.utils.PurifySextadBased
  • edu.cmu.tetrad.search.utils.PurifyTetradBased (implements edu.cmu.tetrad.search.utils.IPurify)
  • edu.cmu.tetrad.algcomparison.statistic.PvalueDistanceToAlpha (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.PvalueUniformityUnderNull (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.search.utils.R0R4StrategyScoreBased (implements edu.cmu.tetrad.search.utils.R0R4Strategy)
  • edu.cmu.tetrad.search.utils.R0R4StrategyTestBased (implements edu.cmu.tetrad.search.utils.R0R4Strategy)
  • edu.cmu.tetrad.search.utils.R5R9Dijkstra
  • edu.cmu.tetrad.search.utils.R5R9Dijkstra.DijkstraEdge
  • edu.cmu.tetrad.search.utils.R5R9Dijkstra.Graph
  • edu.cmu.tetrad.algcomparison.graph.RandomForward (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.graph.RandomGraph
  • edu.cmu.tetrad.graph.RandomGraph.UniformGraphGenerator
  • edu.cmu.tetrad.data.RandomSampler
  • edu.cmu.tetrad.algcomparison.graph.RandomSingleFactorMim (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.algcomparison.graph.RandomTwoFactorMim (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.util.RandomUtil
  • edu.cmu.tetrad.study.RBExperiments
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker.ReadControl
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.ideker.ReadIdeker
  • edu.cmu.tetrad.stat.correlation.RealCovarianceMatrix (implements edu.cmu.tetrad.stat.correlation.RealCovariance)
  • edu.cmu.tetrad.stat.correlation.RealCovarianceMatrixForkJoin (implements edu.cmu.tetrad.stat.correlation.RealCovariance)
  • edu.cmu.tetrad.stat.RealVarianceVector (implements edu.cmu.tetrad.stat.RealVariance)
  • edu.cmu.tetrad.stat.RealVarianceVectorForkJoin (implements edu.cmu.tetrad.stat.RealVariance)
  • edu.cmu.tetrad.data.RegexTokenizer
  • edu.cmu.tetrad.regression.RegressionCovariance (implements edu.cmu.tetrad.regression.Regression)
  • edu.cmu.tetrad.regression.RegressionDataset (implements edu.cmu.tetrad.regression.Regression)
  • edu.cmu.tetrad.regression.RegressionResult (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.regression.RegressionUtils
  • edu.cmu.tetrad.sem.ReidentifyVariables
  • edu.cmu.tetrad.search.utils.ResolveSepsets
  • edu.cmu.tetrad.search.work_in_progress.ResolveSepsetsDci
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal.RevealEvaluator
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.RevealEvaluator
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.akutsu.RevealOutputGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.OutputGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal.RevealOutputGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.OutputGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.RevealOutputGraph (implements edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.OutputGraph)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.reveal.RevealSearch
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.RevealSearch
  • edu.cmu.tetrad.search.Rfci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.pitt.dbmi.algo.bayesian.constraint.search.RfciBsc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.sem.Ricf
  • edu.cmu.tetrad.sem.Ricf.FitConGraphResult
  • edu.cmu.tetrad.sem.Ricf.RicfResult
  • edu.cmu.tetrad.util.RocCalculator
  • edu.cmu.tetrad.bayes.RowSummingExactUpdater (implements edu.cmu.tetrad.bayes.ManipulatingBayesUpdater)
  • edu.cmu.tetrad.algcomparison.examples.RunConfig
  • edu.cmu.tetrad.algcomparison.examples.RunKemmeren
  • edu.cmu.tetrad.search.work_in_progress.SampleVcpc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.SampleVcpcFast (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.algcomparison.examples.Save
  • edu.cmu.tetrad.algcomparison.examples.SaveDGSimulations
  • edu.cmu.tetrad.algcomparison.graph.ScaleFree (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.util.ScoreDescriptions
  • edu.cmu.tetrad.search.score.ScoredGraph (implements java.lang.Comparable<T>, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.test.ScoreIndTest (implements edu.cmu.tetrad.search.IndependenceTest)
  • edu.pitt.csb.stability.SearchWrappers
  • edu.cmu.tetrad.util.SelectionGenerator
  • edu.cmu.tetrad.algcomparison.independence.SemBicDTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.algcomparison.score.SemBicScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.SemBicScore (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.algcomparison.score.SemBicScoreDeterministic (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.work_in_progress.SemBicScoreDeterministic (implements edu.cmu.tetrad.search.score.Score)
  • edu.cmu.tetrad.search.score.SemBicScorer
  • edu.cmu.tetrad.algcomparison.independence.SemBicTest (implements edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper)
  • edu.cmu.tetrad.sem.SemEstimator (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.SemEstimatorGibbs
  • edu.cmu.tetrad.sem.SemEstimatorGibbsParams (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.SemEvidence (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.graph.SemGraph (implements edu.cmu.tetrad.graph.Graph)
  • edu.cmu.tetrad.algcomparison.statistic.SemidirectedPathF1 (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.SemidirectedPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.SemidirectedRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.sem.SemIm (implements edu.cmu.tetrad.util.Im, edu.cmu.tetrad.sem.ISemIm)
  • edu.cmu.tetrad.sem.SemManipulation (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.SemOptimizerEm (implements edu.cmu.tetrad.sem.SemOptimizer)
  • edu.cmu.tetrad.sem.SemOptimizerPowell (implements edu.cmu.tetrad.sem.SemOptimizer)
  • edu.cmu.tetrad.sem.SemOptimizerRegression (implements edu.cmu.tetrad.sem.SemOptimizer)
  • edu.cmu.tetrad.sem.SemOptimizerRicf (implements edu.cmu.tetrad.sem.SemOptimizer)
  • edu.cmu.tetrad.sem.SemOptimizerScattershot (implements edu.cmu.tetrad.sem.SemOptimizer)
  • edu.cmu.tetrad.sem.SemPm (implements edu.cmu.tetrad.util.Pm, edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.SemProposition (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.SemSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.sem.SemStdErrorEstimator
  • edu.cmu.tetrad.algcomparison.simulation.SemThenDiscretize (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.sem.SemUpdater (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.sem.SemXmlParser
  • edu.cmu.tetrad.sem.SemXmlRenderer
  • edu.cmu.tetrad.search.SepsetFinder
  • edu.cmu.tetrad.search.utils.SepsetMap (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.work_in_progress.SepsetMapDci
  • edu.cmu.tetrad.search.utils.SepsetsGreedy (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.SepsetsMaxP (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.SepsetsMinP (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.SepsetsPossibleMsep (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.SepsetsSet (implements edu.cmu.tetrad.search.utils.SepsetProducer)
  • edu.cmu.tetrad.search.utils.Sextad (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.work_in_progress.Sextad (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.search.utils.ShiftSearch
  • edu.cmu.tetrad.data.ShortDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.data.SimpleDataLoader
  • edu.cmu.tetrad.study.gene.tetrad.gene.history.SimpleRandomizer (implements edu.cmu.tetrad.study.gene.tetrad.gene.history.GraphInitializer)
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.SimulateNetwork
  • edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.SimulateNetworkMain
  • edu.cmu.tetrad.algcomparison.simulation.Simulations (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.SimulationTypes
  • edu.cmu.tetrad.algcomparison.simulation.SimulationUtils
  • edu.cmu.tetrad.algcomparison.simulation.SingleDatasetSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.algcomparison.graph.SingleGraph (implements edu.cmu.tetrad.algcomparison.graph.RandomGraph)
  • edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.SingleGraphAlg (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm, edu.cmu.tetrad.algcomparison.utils.HasKnowledge)
  • edu.cmu.tetrad.util.dist.SingleValue (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.search.Sp (implements edu.cmu.tetrad.search.SuborderSearch)
  • edu.cmu.tetrad.search.SpFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.util.dist.Split (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.data.SplitCasesSpec (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.cluster.metrics.SquaredErrorLoss (implements edu.cmu.tetrad.cluster.metrics.Dissimilarity)
  • edu.cmu.tetrad.algcomparison.algorithm.StabilitySelection (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
  • edu.pitt.csb.stability.StabilityUtils
  • edu.cmu.tetrad.sem.StandardizedSemIm (implements edu.cmu.tetrad.data.Simulator)
  • edu.cmu.tetrad.sem.StandardizedSemIm.ParameterRange (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.StandardizedSemSimulation (implements edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.algcomparison.algorithm.StARS (implements edu.cmu.tetrad.algcomparison.algorithm.Algorithm)
  • edu.cmu.tetrad.algcomparison.statistic.Statistics (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.StatUtils
  • edu.cmu.tetrad.bayes.StoredCellProbs (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.bayes.StoredCellProbsObs (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.study.gene.tetrad.gene.graph.StoredLagGraphParams (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.statistic.StructuralHammingDistance (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.SublistGenerator
  • edu.cmu.tetrad.search.SvarFas (implements edu.cmu.tetrad.search.IFas)
  • edu.cmu.tetrad.search.SvarFci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.SvarFges (implements edu.cmu.tetrad.search.utils.DagScorer, edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.SvarGfci (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.utils.SvarSetEndpointStrategy (implements edu.cmu.tetrad.search.utils.SetEndpointStrategy)
  • edu.cmu.tetrad.algcomparison.statistic.utils.TailConfusion
  • edu.cmu.tetrad.algcomparison.statistic.TailPrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TailRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.TaskManager
  • edu.cmu.tetrad.util.TaskRunner<T>
  • edu.cmu.tetrad.sem.TemplateExpander
  • edu.cmu.tetrad.algcomparison.examples.TestBoss
  • edu.cmu.tetrad.algcomparison.examples.TestDegenerateGaussian
  • edu.cmu.tetrad.search.utils.Tetrad
  • edu.cmu.tetrad.util.TetradAlgebra
  • edu.cmu.tetrad.util.TetradLogger
  • edu.cmu.tetrad.util.TetradLogger.EmptyConfig (implements edu.cmu.tetrad.util.TetradLoggerConfig)
  • edu.cmu.tetrad.util.TetradProperties
  • edu.cmu.tetrad.util.TetradSerializableUtils
  • edu.cmu.tetrad.search.utils.TetradTestContinuous (implements edu.cmu.tetrad.search.utils.TetradTest)
  • edu.cmu.tetrad.search.utils.TetradTestDiscrete (implements edu.cmu.tetrad.search.utils.TetradTest)
  • edu.cmu.tetrad.search.utils.TetradTestPopulation (implements edu.cmu.tetrad.search.utils.TetradTest)
  • edu.cmu.tetrad.util.TextTable
  • edu.cmu.tetrad.search.utils.TeyssierScorer
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • edu.cmu.tetrad.calculator.expression.ExpressionInitializationException
  • edu.cmu.tetrad.graph.TimeLagGraph (implements edu.cmu.tetrad.graph.Graph)
  • edu.cmu.tetrad.graph.TimeLagGraph.NodeId
  • edu.cmu.tetrad.algcomparison.TimeoutComparison
  • edu.cmu.tetrad.data.TimeSeriesData (implements edu.cmu.tetrad.data.DataModel)
  • edu.cmu.tetrad.algcomparison.simulation.TimeSeriesSemSimulation (implements edu.cmu.tetrad.algcomparison.utils.HasKnowledge, edu.cmu.tetrad.algcomparison.simulation.Simulation)
  • edu.cmu.tetrad.search.test.TopEigenvalues
  • edu.cmu.tetrad.calculator.Transformation
  • edu.cmu.tetrad.graph.Triple (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagFalseNegativesArrows (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagFalseNegativesTails (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagFalsePositiveArrow (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagFalsePositiveTails (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagPrecisionArrow (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagPrecisionTails (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagRecallArrows (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagRecallTails (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagTruePositiveArrow (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagTruePositiveDirectedPathNonancestor (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TrueDagTruePositiveTails (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.util.dist.TruncatedNormal (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.search.utils.TsDagToPag
  • edu.cmu.tetrad.search.utils.TsUtils
  • edu.cmu.tetrad.search.utils.TsUtils.VarResult
  • edu.cmu.tetrad.algcomparison.statistic.TwoCycleFalseNegative (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TwoCycleFalsePositive (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TwoCyclePrecision (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TwoCycleRecall (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.algcomparison.statistic.TwoCycleTruePositive (implements edu.cmu.tetrad.algcomparison.statistic.Statistic)
  • edu.cmu.tetrad.graph.Underlines (implements edu.cmu.tetrad.util.TetradSerializable, edu.cmu.tetrad.graph.TripleClassifier)
  • edu.cmu.tetrad.util.dist.Uniform (implements edu.cmu.tetrad.util.dist.Distribution)
  • edu.cmu.tetrad.util.UniformityTest
  • edu.cmu.tetrad.bayes.UpdatedBayesIm (implements edu.cmu.tetrad.bayes.BayesIm)
  • edu.cmu.tetrad.calculator.expression.VariableExpression (implements edu.cmu.tetrad.calculator.expression.Expression)
  • edu.cmu.tetrad.stat.VarianceVector (implements edu.cmu.tetrad.stat.Variance)
  • edu.cmu.tetrad.stat.VarianceVectorForkJoin (implements edu.cmu.tetrad.stat.Variance)
  • edu.cmu.tetrad.search.work_in_progress.VcFas
  • edu.cmu.tetrad.search.work_in_progress.VcPc (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.VcPcAlt (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.search.work_in_progress.VcPcFast (implements edu.cmu.tetrad.search.IGraphSearch)
  • edu.cmu.tetrad.util.Vector (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.util.Version (implements edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.data.VerticalDoubleDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.data.VerticalIntDataBox (implements edu.cmu.tetrad.data.DataBox)
  • edu.cmu.tetrad.simulation.Vicinity
  • edu.cmu.tetrad.search.work_in_progress.Washdown
  • edu.cmu.tetrad.algcomparison.score.ZhangShenBoundScore (implements edu.cmu.tetrad.algcomparison.score.ScoreWrapper)
  • edu.cmu.tetrad.search.score.ZsbScore (implements edu.cmu.tetrad.search.score.Score)

Interface Hierarchy

• edu.cmu.tetrad.data.CellTable
• edu.cmu.tetrad.classify.ClassifierDiscrete
• edu.cmu.tetrad.algcomparison.algorithm.cluster.ClusterAlgorithm
• edu.cmu.tetrad.cluster.ClusteringAlgorithm
• java.lang.Comparable<T>
  • edu.cmu.tetrad.graph.Node (also extends edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.data.Variable
• edu.cmu.tetrad.sem.ConnectionFunction
• edu.cmu.tetrad.calculator.expression.Context
• edu.cmu.tetrad.stat.correlation.Covariance
• edu.cmu.tetrad.data.Covariances
• edu.cmu.tetrad.search.utils.DagScorer
• edu.cmu.tetrad.data.DataFilter
• edu.cmu.tetrad.data.DiscretizationSpec
• edu.cmu.tetrad.cluster.metrics.Dissimilarity
• edu.cmu.tetrad.search.EffectiveSampleSizeSettable
• edu.cmu.tetrad.bayes.EmBayesProperties.Estimator
• edu.cmu.tetrad.util.Experimental
• edu.cmu.tetrad.util.Function
• edu.cmu.tetrad.study.gene.tetrad.gene.history.GraphInitializer
• edu.cmu.tetrad.algcomparison.utils.HasKnowledge
• edu.cmu.tetrad.algcomparison.utils.HasParameters
  • edu.cmu.tetrad.algcomparison.algorithm.Algorithm (also extends edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm
  • edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper (also extends edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.score.ScoreWrapper (also extends edu.cmu.tetrad.util.TetradSerializable)
  • edu.cmu.tetrad.algcomparison.simulation.Simulation (also extends edu.cmu.tetrad.util.TetradSerializable)
• edu.cmu.tetrad.algcomparison.utils.HasParameterValues
• edu.cmu.tetrad.search.work_in_progress.Hbsms
• edu.cmu.tetrad.search.IGraphSearch
  • edu.cmu.tetrad.search.IFas
• edu.cmu.tetrad.search.IMbSearch
• edu.cmu.tetrad.search.IndependenceTest
• edu.cmu.tetrad.search.utils.IPurify
• edu.cmu.tetrad.search.work_in_progress.ISScore
• java.lang.Iterable<T>
  • edu.pitt.isp.sverchkov.data.DataTable<N,V>
• edu.cmu.tetrad.search.utils.Kernel
• edu.cmu.tetrad.search.utils.LegalPairs
• edu.cmu.tetrad.util.Memorable
• edu.cmu.tetrad.search.ModelObserver
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.urchin.NbComponent
• edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.OutputGraph
• edu.cmu.tetrad.algcomparison.utils.ParameterValues
• edu.cmu.tetrad.util.Pm
• edu.cmu.tetrad.search.utils.R0R4Strategy
• edu.cmu.tetrad.stat.correlation.RealCovariance
• edu.cmu.tetrad.stat.RealVariance
• edu.cmu.tetrad.regression.Regression
• edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs
• edu.cmu.tetrad.search.test.RowsSettable
• edu.cmu.tetrad.search.score.Score
  • edu.cmu.tetrad.search.score.DiscreteScore
  • edu.cmu.tetrad.search.utils.HasPenaltyDiscount
• edu.cmu.tetrad.sem.Scorer
• edu.cmu.tetrad.search.utils.SepsetProducer
• java.io.Serializable
  • edu.cmu.tetrad.algcomparison.statistic.Statistic
  • edu.cmu.tetrad.util.TetradSerializable
    • edu.cmu.tetrad.algcomparison.algorithm.Algorithm (also extends edu.cmu.tetrad.algcomparison.utils.HasParameters)
      • edu.cmu.tetrad.algcomparison.algorithm.MultiDataSetAlgorithm
    • edu.cmu.tetrad.bayes.BayesUpdater
      • edu.cmu.tetrad.bayes.ManipulatingBayesUpdater
    • edu.cmu.tetrad.bayes.CptMap
    • edu.cmu.tetrad.data.DataBox
    • edu.cmu.tetrad.util.dist.Distribution
    • edu.cmu.tetrad.calculator.expression.Expression
    • edu.cmu.tetrad.calculator.expression.ExpressionDescriptor
    • edu.cmu.tetrad.calculator.expression.ExpressionSignature
    • edu.cmu.tetrad.graph.Graph
    • edu.cmu.tetrad.study.gene.tetrad.gene.history.GraphRandomizer
    • edu.cmu.tetrad.util.Im
      • edu.cmu.tetrad.bayes.BayesIm (also extends edu.cmu.tetrad.data.Simulator, edu.cmu.tetrad.data.VariableSource)
    • edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper (also extends edu.cmu.tetrad.algcomparison.utils.HasParameters)
    • edu.cmu.tetrad.study.gene.tetrad.gene.history.Initializer
    • edu.cmu.tetrad.data.KnowledgeTransferable
      • edu.cmu.tetrad.data.DataModel (also extends edu.cmu.tetrad.data.VariableSource)
        • edu.cmu.tetrad.data.DataSet
        • edu.cmu.tetrad.data.ICovarianceMatrix
    • edu.cmu.tetrad.study.gene.tetrad.gene.history.LagGraph
    • edu.cmu.tetrad.graph.Node (also extends java.lang.Comparable<T>)
      • edu.cmu.tetrad.data.Variable
    • edu.cmu.tetrad.study.gene.tetrad.gene.history.RandomDistribution
    • edu.cmu.tetrad.algcomparison.graph.RandomGraph
    • edu.cmu.tetrad.algcomparison.score.ScoreWrapper (also extends edu.cmu.tetrad.algcomparison.utils.HasParameters)
    • edu.cmu.tetrad.sem.SemOptimizer
    • edu.cmu.tetrad.algcomparison.simulation.Simulation (also extends edu.cmu.tetrad.algcomparison.utils.HasParameters)
    • edu.cmu.tetrad.data.Simulator
      • edu.cmu.tetrad.bayes.BayesIm (also extends edu.cmu.tetrad.util.Im, edu.cmu.tetrad.data.VariableSource)
      • edu.cmu.tetrad.sem.ISemIm
    • edu.cmu.tetrad.util.TetradLoggerConfig
    • edu.cmu.tetrad.util.TetradLoggerConfig.Event
    • edu.cmu.tetrad.study.gene.tetrad.gene.history.UpdateFunction
    • edu.cmu.tetrad.data.VariableSource
      • edu.cmu.tetrad.bayes.BayesIm (also extends edu.cmu.tetrad.util.Im, edu.cmu.tetrad.data.Simulator)
      • edu.cmu.tetrad.data.DataModel (also extends edu.cmu.tetrad.data.KnowledgeTransferable)
        • edu.cmu.tetrad.data.DataSet
        • edu.cmu.tetrad.data.ICovarianceMatrix
  • edu.cmu.tetrad.util.TetradSerializableExcluded
  • edu.cmu.tetrad.util.Unmarshallable
• edu.cmu.tetrad.search.utils.SetEndpointStrategy
• edu.cmu.tetrad.algcomparison.statistic.utils.SimulationPath
• edu.cmu.tetrad.search.SuborderSearch
• edu.cmu.tetrad.algcomparison.algorithm.TakesCovarianceMatrix
• edu.cmu.tetrad.algcomparison.utils.TakesData
• edu.cmu.tetrad.algcomparison.utils.TakesExternalGraph
• edu.cmu.tetrad.algcomparison.independence.TakesGraph
• edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper
• edu.cmu.tetrad.util.TetradLogger.LogDisplayOutputStream
• edu.cmu.tetrad.util.TetradLoggerListener
• edu.cmu.tetrad.search.utils.TetradTest
• edu.cmu.tetrad.graph.TripleClassifier
• edu.cmu.tetrad.algcomparison.utils.UsesScoreWrapper
• edu.cmu.tetrad.stat.Variance

Annotation Interface Hierarchy

• edu.cmu.tetrad.annotation.Algorithm (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Bootstrapping (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Experimental (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Gaussian (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.General (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.LinearGaussian (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Mixed (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Nonexecutable (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.Score (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.TestOfIndependence (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.TimeSeries (implements java.lang.annotation.Annotation)
• edu.cmu.tetrad.annotation.UnmeasuredConfounder (implements java.lang.annotation.Annotation)

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • edu.cmu.tetrad.annotation.AlgType
    • edu.pitt.dbmi.algo.bayesian.constraint.inference.BCCausalInference.OP
    • edu.pitt.dbmi.algo.bayesian.constraint.inference.BCInference.OP
    • edu.cmu.tetrad.search.utils.BpcAlgorithmType (implements edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.search.utils.BpcTestType (implements edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.search.test.ChiSquareTest.CellTableType
    • edu.cmu.tetrad.search.test.ChiSquareTest.TestType
    • edu.cmu.tetrad.search.utils.ClusterSignificance.CheckType
    • edu.cmu.tetrad.algcomparison.Comparison.ComparisonGraph
    • edu.cmu.tetrad.study.performance.Comparison.TableColumn
    • edu.cmu.tetrad.study.performance.Comparison2.TableColumn
    • edu.cmu.tetrad.study.performance.ComparisonParameters.Algorithm
    • edu.cmu.tetrad.study.performance.ComparisonParameters.DataType
    • edu.cmu.tetrad.study.performance.ComparisonParameters.IndependenceTestType
    • edu.cmu.tetrad.study.performance.ComparisonParameters.ResultType
    • edu.cmu.tetrad.search.ConditioningSetType
    • edu.cmu.tetrad.search.CpdagParentDistancesFromTrue.DistanceType
    • edu.cmu.tetrad.search.Cstar.CpdagAlgorithm
    • edu.cmu.tetrad.search.Cstar.SampleStyle
    • edu.cmu.tetrad.data.DataType
    • edu.cmu.tetrad.graph.Edge.Property
    • edu.cmu.tetrad.graph.EdgeTypeProbability.EdgeType
    • edu.cmu.tetrad.graph.Endpoint (implements edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.calculator.expression.ExpressionDescriptor.Position (implements edu.cmu.tetrad.util.TetradSerializable)
    • edu.cmu.tetrad.calculator.parser.ExpressionParser.RestrictionType
    • edu.cmu.tetrad.search.Fask.LeftRight
    • edu.cmu.tetrad.search.FaskOrig.AdjacencyMethod
    • edu.cmu.tetrad.search.FaskOrig.LeftRight
    • edu.cmu.tetrad.search.Fofc.Algorithm
    • edu.cmu.tetrad.search.Ftfc.Algorithm
    • edu.cmu.tetrad.search.score.GicScores.RuleType
    • edu.cmu.tetrad.search.utils.GraphSearchUtils.CpcTripleType
    • edu.cmu.tetrad.graph.GraphUtils.GraphType
    • edu.cmu.tetrad.search.work_in_progress.HbsmsBeam.Move.Type
    • edu.cmu.tetrad.search.test.Kci.KernelType
    • edu.cmu.tetrad.search.Lofs.Rule
    • edu.cmu.tetrad.search.Lofs.Score
    • edu.cmu.tetrad.search.LvLite.ExtraEdgeRemovalStyle
    • edu.cmu.tetrad.search.LvLite.START_WITH
    • edu.cmu.tetrad.util.MillisecondTimes.Type
    • edu.cmu.tetrad.bayes.MlBayesIm.CptMapType
    • edu.cmu.tetrad.bayes.MlBayesIm.InitializationMethod
    • edu.cmu.tetrad.graph.NodeType
    • edu.cmu.tetrad.graph.NodeVariableType
    • edu.cmu.tetrad.sem.ParamComparison
    • edu.cmu.tetrad.sem.ParamConstraintType
    • edu.cmu.tetrad.sem.ParamType
    • edu.cmu.tetrad.search.utils.PcCommon.ColliderDiscovery
    • edu.cmu.tetrad.search.utils.PcCommon.ConflictRule
    • edu.cmu.tetrad.search.utils.PcCommon.FasType
    • edu.cmu.tetrad.search.utils.PcCommon.PcHeuristicType
    • edu.cmu.tetrad.search.utils.R0R4StrategyTestBased.BlockingType
    • edu.cmu.tetrad.search.utils.R5R9Dijkstra.Rule
    • edu.pitt.dbmi.algo.resampling.ResamplingEdgeEnsemble
    • edu.cmu.tetrad.search.utils.ResolveSepsets.Method
    • edu.cmu.tetrad.search.work_in_progress.ResolveSepsetsDci.Method
    • edu.cmu.tetrad.sem.ScoreType
    • edu.cmu.tetrad.search.score.SemBicScore.RuleType
    • edu.cmu.tetrad.sem.StandardizedSemIm.Initialization
    • edu.cmu.tetrad.util.TextTable.Delimiter
    • edu.cmu.tetrad.algcomparison.TimeoutComparison.ComparisonGraph
    • edu.cmu.tetrad.calculator.parser.Token
    • edu.cmu.tetrad.search.work_in_progress.VcPc.CpcTripleType
    • edu.cmu.tetrad.search.work_in_progress.VcPcFast.CpcTripleType

Record Class Hierarchy

• java.lang.Object
  • java.lang.Record
    • edu.cmu.tetrad.search.test.Kci.EigenReturn
    • edu.cmu.tetrad.search.MarkovCheck.MarkovCheckRecord
    • edu.cmu.tetrad.search.score.SemBicScore.CovAndCoefs