Package edu.pitt.csb.mgm

Class Mgm.MGMParams

java.lang.Object

edu.pitt.csb.mgm.Mgm.MGMParams

Enclosing class:

Mgm

public static class Mgm.MGMParams
extends Object

The parameters of the MGM model.

Constructor Summary

Constructors

Constructor	Description
MGMParams()	Default constructor
MGMParams(cern.colt.matrix.DoubleMatrix1D vec, int p, int ltot)	copy params from flattened vector
MGMParams(cern.colt.matrix.DoubleMatrix2D beta, cern.colt.matrix.DoubleMatrix1D betad, cern.colt.matrix.DoubleMatrix2D theta, cern.colt.matrix.DoubleMatrix2D phi, cern.colt.matrix.DoubleMatrix1D alpha1, cern.colt.matrix.DoubleMatrix1D alpha2)	nothing is copied here, all pointers back to inputs...
MGMParams(Mgm.MGMParams parIn)	copy from another parameter set

Method Summary

Modifier and Type	Method	Description
cern.colt.matrix.DoubleMatrix2D	getBeta()	Returns beta.
void	setBeta(cern.colt.matrix.DoubleMatrix2D beta)	Sets beta.
cern.colt.matrix.DoubleMatrix1D	toMatrix1D()	Copy all params into a single vector
String	toString()	Returns a string representation of the object

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MGMParams

public MGMParams()

Default constructor

MGMParams

public MGMParams(cern.colt.matrix.DoubleMatrix2D beta,
 cern.colt.matrix.DoubleMatrix1D betad,
 cern.colt.matrix.DoubleMatrix2D theta,
 cern.colt.matrix.DoubleMatrix2D phi,
 cern.colt.matrix.DoubleMatrix1D alpha1,
 cern.colt.matrix.DoubleMatrix1D alpha2)

nothing is copied here, all pointers back to inputs...

Parameters:

beta - a DoubleMatrix2D object

betad - a DoubleMatrix1D object

theta - a DoubleMatrix2D object

phi - a DoubleMatrix2D object

alpha1 - a DoubleMatrix1D object

alpha2 - a DoubleMatrix1D object

MGMParams

public MGMParams(Mgm.MGMParams parIn)

copy from another parameter set

Parameters:

parIn - a Mgm.MGMParams object

MGMParams

public MGMParams(cern.colt.matrix.DoubleMatrix1D vec,
 int p,
 int ltot)

copy params from flattened vector

Parameters:

vec - a DoubleMatrix1D object

p - a int

ltot - a int

Method Details

toString

public String toString()

Returns a string representation of the object

Overrides:

toString in class Object

Returns:

a string representation of the object

getBeta

public cern.colt.matrix.DoubleMatrix2D getBeta()

Returns beta.

Returns:

a DoubleMatrix2D object

setBeta

public void setBeta(cern.colt.matrix.DoubleMatrix2D beta)

Sets beta.

Parameters:

beta - a DoubleMatrix2D object

toMatrix1D

public cern.colt.matrix.DoubleMatrix1D toMatrix1D()

Copy all params into a single vector

Returns:

a DoubleMatrix1D object