Package edu.pitt.dbmi.algo.bayesian.constraint.search

Class RfciBsc

java.lang.Object

edu.pitt.dbmi.algo.bayesian.constraint.search.RfciBsc

All Implemented Interfaces:

IGraphSearch

public class RfciBsc
extends Object
implements IGraphSearch

Dec 17, 2018 3:28:15 PM

Version:

$Id: $Id

Author:

Chirayu Kong Wongchokprasitti, PhD (chw20@pitt.edu)

Constructor Summary

Constructors

Constructor	Description
RfciBsc(Rfci rfci)	Constructor for RfciBsc.

Method Summary

Modifier and Type	Method	Description
double	getBscD()	Returns the BSC-D score.
double	getBscI()	Returns the BSC-I score.
Graph	getGraphRBD()	Returns the graph that was learned using the BSC-D method.
Graph	getGraphRBI()	Returns the graph that was learned using the BSC-I method.
PrintStream	getOut()	Getter for the field out.
Graph	search()	Runs the search and returns a graph.
void	setCutoffConstrainSearch(double cutoffConstrainSearch)	Setter for the field cutoffConstrainSearch.
void	setCutoffDataSearch(double cutoffDataSearch)	Setter for the field cutoffDataSearch.
void	setLowerBound(double lowerBound)	Sets the lower bound.
void	setNumBscBootstrapSamples(int numBscBootstrapSamples)	Sets the number of bootstrap samples.
void	setNumRandomizedSearchModels(int numRandomizedSearchModels)	Sets the number of randomized search models.
void	setOut(PrintStream out)	Sets the output stream that output (except for log output) should be sent to.
void	setOutputRBD(boolean outputRBD)	Sets whether the output should be RBD.
void	setThresholdNoRandomConstrainSearch(boolean thresholdNoRandomConstrainSearch)	Setter for the field thresholdNoRandomConstrainSearch.
void	setThresholdNoRandomDataSearch(boolean thresholdNoRandomDataSearch)	Setter for the field thresholdNoRandomDataSearch.
void	setUpperBound(double upperBound)	Sets the upper bound.
void	setVerbose(boolean verbose)	Sets whether verbose output should be produced.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RfciBsc

public RfciBsc(Rfci rfci)

Constructor for RfciBsc.

Parameters:

rfci - a Rfci object

Method Details

search

public Graph search()
             throws InterruptedException

Runs the search and returns a graph.

Performs the search.

Specified by:

search in interface IGraphSearch

Returns:

The discovered graph.

Throws:

InterruptedException - if any.

setNumRandomizedSearchModels

public void setNumRandomizedSearchModels(int numRandomizedSearchModels)

Sets the number of randomized search models.

Parameters:

numRandomizedSearchModels - the number of randomized search models.

setNumBscBootstrapSamples

public void setNumBscBootstrapSamples(int numBscBootstrapSamples)

Sets the number of bootstrap samples.

Parameters:

numBscBootstrapSamples - the number of bootstrap samples.

setLowerBound

public void setLowerBound(double lowerBound)

Sets the lower bound.

Parameters:

lowerBound - the lower bound.

setUpperBound

public void setUpperBound(double upperBound)

Sets the upper bound.

Parameters:

upperBound - the upper bound.

setOutputRBD

public void setOutputRBD(boolean outputRBD)

Sets whether the output should be RBD.

Parameters:

outputRBD - true if the output should be RBD.

getGraphRBD

public Graph getGraphRBD()

Returns the graph that was learned using the BSC-D method.

Returns:

a Graph object

getGraphRBI

public Graph getGraphRBI()

Returns the graph that was learned using the BSC-I method.

Returns:

the graph that was learned using the BSC-I method.

getBscD

public double getBscD()

Returns the BSC-D score.

Returns:

the BSC-D score.

getBscI

public double getBscI()

Returns the BSC-I score.

Returns:

the BSC-I score.

setVerbose

public void setVerbose(boolean verbose)

Sets whether verbose output should be produced.

Parameters:

verbose - true if verbose output should be produced.

getOut

public PrintStream getOut()

Getter for the field out.

Returns:

the output stream that output (except for log output) should be sent to.

setOut

public void setOut(PrintStream out)

Sets the output stream that output (except for log output) should be sent to. By detault System.out.

Parameters:

out - the output stream that output (except for log output) should be sent to.

setThresholdNoRandomDataSearch

public void setThresholdNoRandomDataSearch(boolean thresholdNoRandomDataSearch)

Setter for the field thresholdNoRandomDataSearch.

Parameters:

thresholdNoRandomDataSearch - the thresholdNoRandomDataSearch to set

setCutoffDataSearch

public void setCutoffDataSearch(double cutoffDataSearch)

Setter for the field cutoffDataSearch.

Parameters:

cutoffDataSearch - the cutoffDataSearch to set

setThresholdNoRandomConstrainSearch

public void setThresholdNoRandomConstrainSearch(boolean thresholdNoRandomConstrainSearch)

Setter for the field thresholdNoRandomConstrainSearch.

Parameters:

thresholdNoRandomConstrainSearch - the thresholdNoRandomConstrainSearch to set

setCutoffConstrainSearch

public void setCutoffConstrainSearch(double cutoffConstrainSearch)

Setter for the field cutoffConstrainSearch.

Parameters:

cutoffConstrainSearch - the cutoffConstrainSearch to set