Uses of Interface
edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper

Packages that use IndependenceWrapper

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.independence
edu.cmu.tetrad.algcomparison.statistic
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.search	This package contains classes for causal graph search algorithms.
edu.cmu.tetrad.search.work_in_progress	A package for algorithms that are not ready for prime time.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score)	Creates an algorithm.
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score, Graph externalGraph)	Creates an algorithm.
void	MultiDataSetAlgorithm.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	FaskOrig.getIndependenceWrapper()	Retrieves the IndependenceWrapper associated with this object.

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	FaskOrig.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper for the object.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskOrig(IndependenceWrapper test, ScoreWrapper score)	Constructor for Fask.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	FaskConcatenated.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FaskVote.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FciIod.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	FaskConcatenated.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FaskVote.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FciIod.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	FaskConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FaskLofsConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FaskVote.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FciIod.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FgesConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	Images.setIndTestWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper for this algorithm.
void	ImagesBoss.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskConcatenated(ScoreWrapper score, IndependenceWrapper test)	Constructor for FaskConcatenated.
	FaskVote(IndependenceWrapper test, ScoreWrapper score)	Constructor for FaskVote.
	FciIod(IndependenceWrapper test)	Constructor for FciIod.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Cdnod.getIndependenceWrapper()	Retrieves the configured IndependenceWrapper instance associated with this object.
IndependenceWrapper	Cpc.getIndependenceWrapper()	Deprecated. Retrieves the IndependenceWrapper associated with this object.
IndependenceWrapper	Cstar.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Fas.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Gin.getIndependenceWrapper()
IndependenceWrapper	Grasp.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Pc.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PcMax.getIndependenceWrapper()	Deprecated. Returns the independence wrapper.
IndependenceWrapper	PcMb.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Pcmci.getIndependenceWrapper()	Retrieves the current instance of IndependenceWrapper associated with this object.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Cdnod.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper test instance for this object.
void	Cpc.setIndependenceWrapper(IndependenceWrapper test)	Deprecated. Sets the independence wrapper for the algorithm.
void	Cstar.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Fas.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Gin.setIndependenceWrapper(IndependenceWrapper test)
void	Grasp.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Pc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	PcMax.setIndependenceWrapper(IndependenceWrapper test)	Deprecated. Sets the independence wrapper.
void	PcMb.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Pcmci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper instance to be used for the PCMCI algorithm.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cdnod(IndependenceWrapper test)	Constructs a new instance of Cdnod with the specified IndependenceWrapper.
	Cpc(IndependenceWrapper test)	Deprecated. This class represents the constructor for the Cpc class.
	Cstar(IndependenceWrapper test, ScoreWrapper score)	Constructor for Cstar.
	Fas(IndependenceWrapper test)	Constructor for Fas.
	Grasp(IndependenceWrapper test, ScoreWrapper score)	Constructor for Grasp.
	Pc(IndependenceWrapper test)	Constructor for Pc.
	PcMax(IndependenceWrapper test)	Deprecated. Constructor for PcMax.
	PcMb(IndependenceWrapper type)	Constructor for PcMb.
	Pcmci(IndependenceWrapper test)	Constructs an instance of the Pcmci class with a specified independence test.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	BossFci.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this BOSS-FCI algorithm.
IndependenceWrapper	Ccd.getIndependenceWrapper()	Returns the IndependenceWrapper object associated with this instance.
IndependenceWrapper	Cfci.getIndependenceWrapper()	Deprecated. Retrieves the IndependenceWrapper used by the algorithm.
IndependenceWrapper	DmFcit.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this instance.
IndependenceWrapper	DmFciT2.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this instance.
IndependenceWrapper	DmPc.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	Fci.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	FciCyclicPw.getIndependenceWrapper()	Retrieves the current instance of the IndependenceWrapper used for conditional independence testing in the algorithm.
IndependenceWrapper	FciMax.getIndependenceWrapper()	Deprecated. Retrieves the IndependenceWrapper associated with the algorithm.
IndependenceWrapper	Fcit.getIndependenceWrapper()
IndependenceWrapper	FgesFci.getIndependenceWrapper()	Returns the independence wrapper associated with this instance.
IndependenceWrapper	Gfci.getIndependenceWrapper()	Returns the independence wrapper associated with this instance.
IndependenceWrapper	GraspFci.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	IsGfci.getIndependenceWrapper()
IndependenceWrapper	Rfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	SpFci.getIndependenceWrapper()	Retrieves the IndependenceWrapper associated with this algorithm.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	BossFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	Ccd.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Updates the independence wrapper for this algorithm.
void	Cfci.setIndependenceWrapper(IndependenceWrapper test)	Deprecated. Sets the independence wrapper for the algorithm.
void	DmFcit.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the IndependenceWrapper object for this algorithm.
void	DmFciT2.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the IndependenceWrapper object for this algorithm.
void	DmPc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Fci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object associated with this method.
void	FciCyclicPw.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper instance used for conditional independence testing in the algorithm.
void	FciMax.setIndependenceWrapper(IndependenceWrapper test)	Deprecated. Sets the independence wrapper for the algorithm.
void	Fcit.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FgesFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	Gfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	GraspFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	IsGfci.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	Rfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	SpFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for the algorithm.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	BossFci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	Ccd(IndependenceWrapper test)	Constructs a new CCD algorithm with the given independence test.
	Cfci(IndependenceWrapper test)	Deprecated. Constructs a new conservative FCI algorithm with the given independence test.
	DmFcit(IndependenceWrapper test, ScoreWrapper score)	Represents a DM-FCIT algorithm.
	DmFciT2(IndependenceWrapper test, ScoreWrapper score)	Represents a DM-FCIT algorithm.
	DmPc(IndependenceWrapper test)	Constructor for DM-PC.
	Fci(IndependenceWrapper test)	Constructor.
	FciCyclicPw(IndependenceWrapper test)	Constructor for the FciCyclicPw class that initializes the algorithm with a specified independence test wrapper.
	FciMax(IndependenceWrapper test)	Deprecated. Constructor for FciMax.
	Fcit(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FgesFci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of FGES-FCI with the given IndependenceWrapper and ScoreWrapper.
	Gfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of GFCI with the given IndependenceWrapper and ScoreWrapper.
	GraspFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for GraspFci.
	IsGfci(IndependenceWrapper test)	Constructor for Fges.
	Rfci(IndependenceWrapper test)	Creates an instance of Rfci with the given IndependenceWrapper.
	SpFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for the SpFci class.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.independence

Subinterfaces of IndependenceWrapper in edu.cmu.tetrad.algcomparison.independence

Modifier and Type	Interface	Description
interface	BlockIndependenceWrapper	An interface that extends functionality of the IndependenceWrapper and HasParameters interfaces by adding support for block-specific configuration in independence testing.

Classes in edu.cmu.tetrad.algcomparison.independence that implement IndependenceWrapper

Modifier and Type	Class	Description
class	BasisFunctionBlocksIndTest	Wrapper for BF-Blocks-Test.
class	BasisFunctionLrt	Wrapper for BF-LRT.
class	BlocksIndTest	Deprecated.
class	BlocksIndTestLemma10	Deprecated.
class	BlocksIndTestTs	Wrapper for BF-Blocks-Test.
class	CciTest	Wrapper for Daudin Conditional Independence test.
class	ChiSquare	Wrapper for Fisher Z test.
class	ConditionalGaussianLrt	Wrapper for Fisher Z test.
class	DegenerateGaussianLrt	Wrapper for DG LRT.
class	DgBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.
class	FisherZ	Wrapper for Fisher Z test.
class	Gin	Wrapper for GIN (Generalized Independent Noise) residual-independence test.
class	GSquare	Wrapper for Fisher Z test.
class	Kci	Wrapper for KCI test.
class	MSeparationTest	Wrapper for M-separation test.
class	MultinomialLogisticRegressionWald	Wrapper for Fisher Z test.
class	Mvplrt	Wrapper for Fisher Z test.
class	PoissonBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.
class	ProbabilisticTest	Dec 17, 2018 3:44:46 PM
class	RankIndependenceTestLemma10Singletons	Deprecated.
class	RankIndependenceTestTs	Wrapper for Rank independence test.
class	RankIndependenceTestTsSingletons	Deprecated.
class	RankIndependenceTestWilkesSingletons	Deprecated.
class	Rcit	Wrapper for RCIT test.
class	SemBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.statistic

Constructors in edu.cmu.tetrad.algcomparison.statistic with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	MarkovCheckAdPasses(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAdPassesBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAndersonDarlingP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAndersonDarlingPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckBinomialP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckBinomialPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckFractionDependentH0(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckFractionDependentH1(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKolmogorovSmirnoffP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKolmogorovSmirnoffPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKsPasses(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKsPassesBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	McGetNumTestsH0(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the number of tests for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	McGetNumTestsH1(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the number of tests for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.utils

Methods in edu.cmu.tetrad.algcomparison.utils that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	TakesIndependenceWrapper.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	TakesIndependenceWrapper.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.

Uses of IndependenceWrapper in edu.cmu.tetrad.search

Constructors in edu.cmu.tetrad.search with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cstar(IndependenceWrapper test, ScoreWrapper score, Parameters parameters)	Constructor.

Uses of IndependenceWrapper in edu.cmu.tetrad.search.work_in_progress

Constructors in edu.cmu.tetrad.search.work_in_progress with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskVote(List<DataSet> dataSets, ScoreWrapper score, IndependenceWrapper test)	Constructor.