Package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Class PcMax

java.lang.Object
edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.PcMax
All Implemented Interfaces:
Algorithm, LatentStructureAlgorithm, ReturnsBootstrapGraphs, TakesCovarianceMatrix, HasKnowledge, HasParameters, TakesIndependenceWrapper, TetradSerializable, Serializable
@Algorithm(name="PC-Max", command="pc-max", algoType=forbid_latent_common_causes) @Deprecated(since="7.9", forRemoval=false) @Bootstrapping public class PcMax extends AbstractBootstrapAlgorithm implements Algorithm, HasKnowledge, TakesIndependenceWrapper, ReturnsBootstrapGraphs, TakesCovarianceMatrix, LatentStructureAlgorithm
Deprecated.
PC-Max. This version of PC will orient unshielded colliders similarly to CPC, but instead of listing all subsets S for X--Y--Z, !adj(X, Z), or adj(X) \ {Z} or adj(Z) \ {X} and seeing whether the facts X _||_ Z | S that test as true contain or do not contain Y, we list the p-values for all of these facts and pick the S that maximizes the p-value to do the unshielded collider orientations.
Version:
$Id: $Id
Author:
josephramsey
See Also:

  • Constructor Details

  • Method Details

    • getComparisonGraph

      public Graph getComparisonGraph(Graph graph)
      Deprecated.
      Returns that graph that the result should be compared to.
      Specified by:
      getComparisonGraph in interface Algorithm
      Parameters:
      graph - The true directed graph, if there is one.
      Returns:
      The comparison graph.

    • getDescription

      public String getDescription()
      Deprecated.
      Returns a short, one-line description of this algorithm. This will be printed in the report.
      Specified by:
      getDescription in interface Algorithm
      Returns:
      This description.

    • getDataType

      public DataType getDataType()
      Deprecated.
      Returns the data type that the search requires, whether continuous, discrete, or mixed.
      Specified by:
      getDataType in interface Algorithm
      Returns:
      This type.

    • getParameters

      public List<String> getParameters()
      Deprecated.
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not
      Specified by:
      getParameters in interface HasParameters
      Returns:
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not already defined they'll need to be defined there.

    • getKnowledge

      public Knowledge getKnowledge()
      Deprecated.
      Returns a knowledge object.
      Specified by:
      getKnowledge in interface HasKnowledge
      Returns:
      a knowledge object.

    • setKnowledge

      public void setKnowledge(Knowledge knowledge)
      Deprecated.
      Sets a knowledge object.
      Specified by:
      setKnowledge in interface HasKnowledge
      Parameters:
      knowledge - a knowledge object.

    • getIndependenceWrapper

      public IndependenceWrapper getIndependenceWrapper()
      Deprecated.
      Returns the independence wrapper.
      Specified by:
      getIndependenceWrapper in interface TakesIndependenceWrapper
      Returns:
      the independence wrapper.

    • setIndependenceWrapper

      public void setIndependenceWrapper(IndependenceWrapper test)
      Deprecated.
      Sets the independence wrapper.
      Specified by:
      setIndependenceWrapper in interface TakesIndependenceWrapper
      Parameters:
      test - the independence wrapper.