Package edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Class Fci

java.lang.Object
edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.Fci
All Implemented Interfaces:
Algorithm, LatentStructureAlgorithm, ReturnsBootstrapGraphs, TakesCovarianceMatrix, HasKnowledge, HasParameters, TakesIndependenceWrapper, TetradSerializable, Serializable
@Algorithm(name="FCI", command="fci", algoType=allow_latent_common_causes) @Bootstrapping public class Fci extends AbstractBootstrapAlgorithm implements Algorithm, HasKnowledge, TakesIndependenceWrapper, ReturnsBootstrapGraphs, TakesCovarianceMatrix, LatentStructureAlgorithm
The Fast Causal Inference (FCI) algorithm.
Version:
$Id: $Id
Author:
josephramsey
See Also:

  • Constructor Details

  • Method Details

    • runSearch

      public Graph runSearch(DataModel dataModel, Parameters parameters) throws InterruptedException
      Runs a search algorithm to find a graph based on the given data model and parameters.
      Parameters:
      dataModel - the data model containing the dataset
      parameters - the parameters for the search algorithm
      Returns:
      the resulting graph
      Throws:
      InterruptedException

    • getComparisonGraph

      public Graph getComparisonGraph(Graph graph)
      Returns the comparison graph based on the true directed graph, if there is one.
      Specified by:
      getComparisonGraph in interface Algorithm
      Parameters:
      graph - The true directed graph, if there is one.
      Returns:
      The comparison graph.

    • getDescription

      public String getDescription()
      Returns a short, one-line description of this algorithm. The description includes the description of the independence test used by this algorithm.
      Specified by:
      getDescription in interface Algorithm
      Returns:
      The description of the algorithm.

    • getDataType

      public DataType getDataType()
      Returns the data type that the search requires, whether continuous, discrete, or mixed.
      Specified by:
      getDataType in interface Algorithm
      Returns:
      The data type required by the search algorithm.

    • getParameters

      public List<String> getParameters()
      Retrieves the list of parameters used by this algorithm.
      Specified by:
      getParameters in interface HasParameters
      Returns:
      The list of parameters used by this algorithm.

    • getKnowledge

      public Knowledge getKnowledge()
      Retrieves the knowledge object.
      Specified by:
      getKnowledge in interface HasKnowledge
      Returns:
      The knowledge object.

    • setKnowledge

      public void setKnowledge(Knowledge knowledge)
      Sets the knowledge object for this method.
      Specified by:
      setKnowledge in interface HasKnowledge
      Parameters:
      knowledge - The knowledge object to set.

    • getIndependenceWrapper

      public IndependenceWrapper getIndependenceWrapper()
      Retrieves the IndependenceWrapper object associated with this method. This method is used to get the independence test used by the algorithm.
      Specified by:
      getIndependenceWrapper in interface TakesIndependenceWrapper
      Returns:
      The IndependenceWrapper object associated with this method.

    • setIndependenceWrapper

      public void setIndependenceWrapper(IndependenceWrapper test)
      Sets the IndependenceWrapper object associated with this method.
      Specified by:
      setIndependenceWrapper in interface TakesIndependenceWrapper
      Parameters:
      test - the independence wrapper to set