Uses of Annotation Interface
edu.cmu.tetrad.annotation.Bootstrapping

Packages that use Bootstrapping

Package	Description
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.algorithm.other
edu.cmu.tetrad.algcomparison.algorithm.pairwise

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Classes in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Dagma	Implements the DAGMA algorithm.
class	DirectLingam	Direct LiNGAM.
class	Fask	FASK algorithm.
class	FaskOrig	The FaskOrig class is an implementation of the FASK-Orig algorithm for causal discovery.
class	IcaLingam	IcaLingam class implements the Algorithm and ReturnsBootstrapGraphs interface.
class	IcaLingD	IcaLingD is an implementation of the Algorithm interface that performs the ICA-LiNG-D algorithm for discovering causal models for the linear non-Gaussian case where the underlying model might be cyclic.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.multi

Classes in edu.cmu.tetrad.algcomparison.algorithm.multi with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	FaskConcatenated	Wraps the IMaGES algorithm for continuous variables.
class	FaskLofsConcatenated	Wraps the IMaGES algorithm for continuous variables.
class	FaskVote	Wraps the MultiFask algorithm for continuous variables.
class	FgesConcatenated	Requires that the parameter 'randomSelectionSize' be set to indicate how many datasets should be taken at a time (randomly).
class	Images	Wraps the IMaGES algorithm for continuous variables.
class	ImagesBoss	Wraps the IMaGES algorithm for continuous variables.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Classes in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Boss	BOSS (Best Order Score Search)
class	Cam	Represents the CAM algorithm, which is a causal additive model search algorithm.
class	Cdnod	CD-NOD wrapper for algcomparison.
class	Cpc	Deprecated.
class	Fas	Fast Adjacency Search (FAS)--i.e., the PC adjacency step, which is used in many algorithms.
class	Fges	FGES (the heuristic version).
class	FgesMb	FGES-MB (the heuristic version).
class	Gin	GIN (Generalized Independent Noise Search)
class	Grasp	GRaSP (Greedy Relaxations of Sparsest Permutation)
class	IsFges	IS-FGES (Instance-Specific FGES) wrapper for the algcomparison interface.
class	Pc	Peter/Clark algorithm (PC).
class	Pcd	PC.
class	PcMax	Deprecated.
class	PcMb	PC.
class	RestrictedBoss	BOSS-DC (Best Order Score Search Divide and Conquer)
class	Sp	SP (Sparsest Permutation)
class	TwoStep	Deprecated.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Classes in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	BossFci	Adjusts FGES-FCI to use a permutation algorithm (such as BOSS-Tuck) to do the initial steps of finding adjacencies and unshielded colliders.
class	BossPod	This class represents the FCIT algorithm, which is an implementation of the FGES-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	Ccd	CCD (Cyclic Causal Discovery)
class	Cfci	Deprecated.
class	DmFcit	This class represents the Detect-Mimic-FCIT (DM-FCIT) algorithm, a specialized variant of the DM-PC and FCIT algorithms designed to identify intermediate latent variables.
class	DmPc	Detect-Mimic-PC (DM-PC) algorithm.
class	Fci	The Fast Causal Inference (FCI) algorithm.
class	FciCyclicPw	FCI-CPW: Run FCI with internally constructed PW-forbidden knowledge, then orient edges using a pairwise left-right rule on standardized data in cases that are safe under no-selection-bias cyclic semantics: Tail–tail (—) edges Orient per pairwise rule. Tail–circle (—o) edges If pairwise prefers x→y, set x→y (symmetrically, if prefers y→x, set y→x). Circle–circle (o–o) edges If pairwise prefers x→y, set x o→y (symmetrically for y→x).
class	FciMax	Deprecated.
class	Fcit	This class represents the FCI Targeted Testing (FCIT) algorithm, which is variant of the *-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	Gfci	The GFCI class represents the Greedy Fast Causal Inference algorithm, adjusted as in *-FCI.
class	GraspFci	GRaSP-FCI, an implentatation of *-FCI using GRaSP.
class	IsGfci	IS-GFCI (Instance-Specific GFCI) wrapper for the algcomparison interface.
class	Rfci	RFCI.
class	SpFci	Adjusts GFCI to use a permutation algorithm (in this case SP) to do the initial steps of finding adjacencies and unshielded colliders.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.other

Classes in edu.cmu.tetrad.algcomparison.algorithm.other with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	FactorAnalysis	Factor analysis.
class	Glasso	GLASSO.
class	MimbuildBollen	Mimbuild Bollen.
class	MimbuildPca	Mimbuild PCA.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.pairwise

Classes in edu.cmu.tetrad.algcomparison.algorithm.pairwise with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Eb	EB.
class	FaskPw	FASK-PW (pairwise).
class	R1	R1.
class	R2	R2.
class	R3	R3.
class	Rskew	RSkew.
class	RskewE	RSkewE.
class	Skew	Skew.
class	SkewE	SkewE.
class	Tanh	Tanh.