Uses of Class
edu.cmu.tetrad.data.Knowledge

Packages that use Knowledge

Package	Description
edu.cmu.tetrad.algcomparison.algorithm.cluster
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.simulation
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.data
edu.cmu.tetrad.graph
edu.cmu.tetrad.performance
edu.cmu.tetrad.search
edu.cmu.tetrad.search.mb
edu.cmu.tetrad.sem
edu.pitt.dbmi.algo.bayesian.constraint.search
edu.pitt.dbmi.algo.resampling
edu.pitt.dbmi.algo.resampling.task

Uses of Knowledge in edu.cmu.tetrad.algcomparison.algorithm.cluster

Methods in edu.cmu.tetrad.algcomparison.algorithm.cluster that return Knowledge

Modifier and Type	Method	Description
Knowledge	Bpc.getKnowledge()
Knowledge	Fofc.getKnowledge()
Knowledge	Ftfc.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.algorithm.cluster with parameters of type Knowledge

Modifier and Type	Method	Description
void	Bpc.setKnowledge(Knowledge knowledge)
void	Fofc.setKnowledge(Knowledge knowledge)
void	Ftfc.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return Knowledge

Modifier and Type	Method	Description
Knowledge	CcdMaxConcatenated.getKnowledge()
Knowledge	Fask.getKnowledge()
Knowledge	FaskConcatenated.getKnowledge()
Knowledge	FaskLofsConcatenated.getKnowledge()
Knowledge	FaskVote.getKnowledge()
Knowledge	FasLofs.getKnowledge()
Knowledge	FgesConcatenated.getKnowledge()
Knowledge	Images.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type Knowledge

Modifier and Type	Method	Description
void	CcdMaxConcatenated.setKnowledge(Knowledge knowledge)
void	Fask.setKnowledge(Knowledge knowledge)
void	FaskConcatenated.setKnowledge(Knowledge knowledge)
void	FaskLofsConcatenated.setKnowledge(Knowledge knowledge)
void	FaskVote.setKnowledge(Knowledge knowledge)
void	FasLofs.setKnowledge(Knowledge knowledge)
void	FgesConcatenated.setKnowledge(Knowledge knowledge)
void	Images.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return Knowledge

Modifier and Type	Method	Description
Knowledge	Boss.getKnowledge()
Knowledge	BossMb.getKnowledge()
Knowledge	BossMb2.getKnowledge()
Knowledge	Bridges.getKnowledge()
Knowledge	Bridges2.getKnowledge()
Knowledge	Cpc.getKnowledge()
Knowledge	CpcStable.getKnowledge()
Knowledge	Fas.getKnowledge()
Knowledge	Fges.getKnowledge()
Knowledge	FgesMb.getKnowledge()
Knowledge	FgesMeasurement.getKnowledge()
Knowledge	Grasp.getKnowledge()
Knowledge	GraspTol.getKnowledge()
Knowledge	Pc.getKnowledge()
Knowledge	Pcd.getKnowledge()
Knowledge	PcMax.getKnowledge()
Knowledge	PcMb.getKnowledge()
Knowledge	PcStable.getKnowledge()
Knowledge	SingleGraphAlg.getKnowledge()
Knowledge	Sp.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type Knowledge

Modifier and Type	Method	Description
void	Boss.setKnowledge(Knowledge knowledge)
void	BossMb.setKnowledge(Knowledge knowledge)
void	BossMb2.setKnowledge(Knowledge knowledge)
void	Bridges.setKnowledge(Knowledge knowledge)
void	Bridges2.setKnowledge(Knowledge knowledge)
void	Cpc.setKnowledge(Knowledge knowledge)
void	CpcStable.setKnowledge(Knowledge knowledge)
void	Fas.setKnowledge(Knowledge knowledge)
void	Fges.setKnowledge(Knowledge knowledge)
void	FgesMb.setKnowledge(Knowledge knowledge)
void	FgesMeasurement.setKnowledge(Knowledge knowledge)
void	Grasp.setKnowledge(Knowledge knowledge)
void	GraspTol.setKnowledge(Knowledge knowledge)
void	Pc.setKnowledge(Knowledge knowledge)
void	Pcd.setKnowledge(Knowledge knowledge)
void	PcMax.setKnowledge(Knowledge knowledge)
void	PcMb.setKnowledge(Knowledge knowledge)
void	PcStable.setKnowledge(Knowledge knowledge)
void	SingleGraphAlg.setKnowledge(Knowledge knowledge)
void	Sp.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return Knowledge

Modifier and Type	Method	Description
Knowledge	Bfci.getKnowledge()
Knowledge	BfciTr.getKnowledge()
Knowledge	CcdMax.getKnowledge()
Knowledge	Cfci.getKnowledge()
Knowledge	Fci.getKnowledge()
Knowledge	FciMax.getKnowledge()
Knowledge	Gfci.getKnowledge()
Knowledge	GraspFci.getKnowledge()
Knowledge	PagSampleRfci.getKnowledge()
Knowledge	Rfci.getKnowledge()
Knowledge	RfciBsc.getKnowledge()
Knowledge	SpFci.getKnowledge()
Knowledge	SvarFci.getKnowledge()
Knowledge	SvarGfci.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type Knowledge

Modifier and Type	Method	Description
void	Bfci.setKnowledge(Knowledge knowledge)
void	BfciTr.setKnowledge(Knowledge knowledge)
void	CcdMax.setKnowledge(Knowledge knowledge)
void	Cfci.setKnowledge(Knowledge knowledge)
void	Fci.setKnowledge(Knowledge knowledge)
void	FciMax.setKnowledge(Knowledge knowledge)
void	Gfci.setKnowledge(Knowledge knowledge)
void	GraspFci.setKnowledge(Knowledge knowledge)
void	PagSampleRfci.setKnowledge(Knowledge knowledge)
void	Rfci.setKnowledge(Knowledge knowledge)
void	RfciBsc.setKnowledge(Knowledge knowledge)
void	SpFci.setKnowledge(Knowledge knowledge)
void	SvarFci.setKnowledge(Knowledge knowledge)
void	SvarGfci.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.algcomparison.simulation

Methods in edu.cmu.tetrad.algcomparison.simulation that return Knowledge

Modifier and Type	Method	Description
Knowledge	TimeSeriesSemSimulation.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.simulation with parameters of type Knowledge

Modifier and Type	Method	Description
void	TimeSeriesSemSimulation.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.algcomparison.utils

Methods in edu.cmu.tetrad.algcomparison.utils that return Knowledge

Modifier and Type	Method	Description
Knowledge	HasKnowledge.getKnowledge()

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type Knowledge

Modifier and Type	Method	Description
void	HasKnowledge.setKnowledge(Knowledge knowledge)	Sets a knowledge object.

Uses of Knowledge in edu.cmu.tetrad.data

Methods in edu.cmu.tetrad.data that return Knowledge

Modifier and Type	Method	Description
Knowledge	Knowledge.copy()	Makes a shallow copy.
Knowledge	BoxDataSet.getKnowledge()
final Knowledge	CorrelationMatrixOnTheFly.getKnowledge()
final Knowledge	CovarianceMatrix.getKnowledge()
final Knowledge	CovarianceMatrixOnTheFly.getKnowledge()
Knowledge	DataModelList.getKnowledge()
Knowledge	ICovarianceMatrix.getKnowledge()
Knowledge	IndependenceFacts.getKnowledge()
Knowledge	KnowledgeTransferable.getKnowledge()
Knowledge	NumberObjectDataSet.getKnowledge()
Knowledge	TimeSeriesData.getKnowledge()
static Knowledge	SimpleDataLoader.loadKnowledge(File file, DelimiterType delimiter, String commentMarker)	Loads knowledge from a file.
static Knowledge	Knowledge.serializableInstance()	Generates a simple exemplar of this class to test serialization.

Methods in edu.cmu.tetrad.data with parameters of type Knowledge

Modifier and Type	Method	Description
static void	DataWriter.saveKnowledge(Knowledge knowledge, Writer out)
void	BoxDataSet.setKnowledge(Knowledge knowledge)	Sets knowledge to be associated with this data set.
final void	CorrelationMatrixOnTheFly.setKnowledge(Knowledge knowledge)	Associates knowledge with this data.
final void	CovarianceMatrix.setKnowledge(Knowledge knowledge)	Associates knowledge with this data.
final void	CovarianceMatrixOnTheFly.setKnowledge(Knowledge knowledge)	Associates knowledge with this data.
void	DataModelList.setKnowledge(Knowledge knowledge)
void	ICovarianceMatrix.setKnowledge(Knowledge knowledge)
void	IndependenceFacts.setKnowledge(Knowledge knowledge)
void	KnowledgeTransferable.setKnowledge(Knowledge knowledge)	Sets knowledge to a copy of the given object.
void	NumberObjectDataSet.setKnowledge(Knowledge knowledge)	Sets knowledge to be associated with this data set.
void	TimeSeriesData.setKnowledge(Knowledge knowledge)

Constructors in edu.cmu.tetrad.data with parameters of type Knowledge

Modifier	Constructor	Description
	Knowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.graph

Methods in edu.cmu.tetrad.graph with parameters of type Knowledge

Modifier and Type	Method	Description
static void	GraphUtils.addForbiddenReverseEdgesForDirectedEdges(Graph graph, Knowledge knowledge)
static void	GraphUtils.removeNonSkeletonEdges(Graph graph, Knowledge knowledge)
static void	GraphUtils.retainUnshieldedColliders(Graph graph, Knowledge knowledge)	Retains only the unshielded colliders of the given graph.

Uses of Knowledge in edu.cmu.tetrad.performance

Methods in edu.cmu.tetrad.performance that return Knowledge

Modifier and Type	Method	Description
static Knowledge	Comparison2.getKnowledge(Graph graph)

Uses of Knowledge in edu.cmu.tetrad.search

Methods in edu.cmu.tetrad.search that return Knowledge

Modifier and Type	Method	Description
Knowledge	Bes.getKnowledge()
Knowledge	BFci.getKnowledge()
Knowledge	BossMb.getKnowledge()
Knowledge	BossMb2.getKnowledge()
Knowledge	Bridges.getKnowledge()
Knowledge	Bridges2.getKnowledge()
Knowledge	Ccd.getKnowledge()
Knowledge	CcdMax.getKnowledge()
Knowledge	Cefs.getKnowledge()
Knowledge	Cfci.getKnowledge()
Knowledge	Cpc.getKnowledge()
Knowledge	CpcStable.getKnowledge()
Knowledge	DagInCPDAGIterator.getKnowledge()
Knowledge	DagToPag.getKnowledge()
Knowledge	Fas.getKnowledge()
Knowledge	FasConcurrent.getKnowledge()	Deprecated.
Knowledge	FasDci.getKnowledge()
Knowledge	FasDeterministic.getKnowledge()
Knowledge	FasFdr.getKnowledge()
Knowledge	Fask.getKnowledge()
Knowledge	FasLofs.getKnowledge()
Knowledge	FasStableConcurrentFdr.getKnowledge()
Knowledge	Fasts.getKnowledge()
Knowledge	Fci.getKnowledge()	Retrieves the background knowledge that was set.
Knowledge	FciMax.getKnowledge()	Retrieves the background knowledge that was set.
Knowledge	FciOrient.getKnowledge()	The background knowledge.
Knowledge	Fges.getKnowledge()
Knowledge	FgesMb.getKnowledge()
Knowledge	FgesOrienter.getKnowledge()
Knowledge	GFci.getKnowledge()
Knowledge	GraspFci.getKnowledge()
Knowledge	HbmsBeam.getKnowledge()
Knowledge	HbsmsGes.getKnowledge()
Knowledge	IFas.getKnowledge()
Knowledge	Kpc.getKnowledge()
Knowledge	LvBesJoe.getKnowledge()
Knowledge	Mimbuild.getKnowledge()
Knowledge	MimbuildTrek.getKnowledge()
Knowledge	MultiFaskV1.getKnowledge()
Knowledge	OrientCollidersMaxP.getKnowledge()
Knowledge	Pc.getKnowledge()
Knowledge	PcAll.getKnowledge()
Knowledge	Pcd.getKnowledge()
Knowledge	PcLocal.getKnowledge()
Knowledge	PcMax.getKnowledge()
Knowledge	PcMb.getKnowledge()
Knowledge	PcStable.getKnowledge()
Knowledge	PcStableMax.getKnowledge()
Knowledge	PermutationBes.getKnowledge()
Knowledge	PermutationSearch.getKnowledge()
Knowledge	PossibleDsepFci.getKnowledge()
Knowledge	Rfci.getKnowledge()
Knowledge	SampleVcpc.getKnowledge()
Knowledge	SampleVcpcFast.getKnowledge()
Knowledge	ShiftSearch.getKnowledge()
Knowledge	SpFci.getKnowledge()
Knowledge	SvarFci.getKnowledge()
Knowledge	SvarFciOrient.getKnowledge()	The background knowledge.
Knowledge	SvarGfci.getKnowledge()
Knowledge	TimeSeriesLagSearch.getKnowledge()
static Knowledge	TimeSeriesUtils.getKnowledge(Graph graph)
Knowledge	TsDagToPag.getKnowledge()
Knowledge	TsFges2.getKnowledge()
Knowledge	Vcfas.getKnowledge()
Knowledge	Vcpc.getKnowledge()
Knowledge	VcpcAlt.getKnowledge()
Knowledge	VcpcFast.getKnowledge()

Methods in edu.cmu.tetrad.search with parameters of type Knowledge

Modifier and Type	Method	Description
static void	SearchGraphUtils.arrangeByKnowledgeTiers(Graph graph, Knowledge knowledge)
static Graph	SearchGraphUtils.dagFromCPDAG(Graph graph, Knowledge knowledge)
static boolean	TsDagToPag.existsInducingPathInto(Node x, Node y, Graph graph, Knowledge knowledge)
static boolean	TsDagToPag.existsInducingPathVisitts(Graph graph, Node a, Node b, Node x, Node y, LinkedList<Node> path, Knowledge knowledge)
void	FciOrient.fciOrientbk(Knowledge bk, Graph graph, List<Node> variables)	Orients according to background knowledge
static List<Graph>	SearchGraphUtils.getDagsInCpdagMeek(Graph cpdag, Knowledge knowledge)
static Graph	PermutationSearch.getGraph(List<Node> nodes, Map<Node,Set<Node>> parents, Knowledge knowledge, boolean cpDag)
static boolean	FciOrient.isArrowpointAllowed(Node x, Node y, Graph graph, Knowledge knowledge)
static boolean	PcAll.isArrowpointAllowed(Object from, Object to, Knowledge knowledge)	Checks if an arrowpoint is allowed by background knowledge.
static boolean	PcLocal.isArrowpointAllowed(Object from, Object to, Knowledge knowledge)	Checks if an arrowpoint is allowed by background knowledge.
static boolean	SearchGraphUtils.isArrowpointAllowed(Object from, Object to, Knowledge knowledge)	Checks if an arrowpoint is allowed by background knowledge.
static boolean	Cpc.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	CpcStable.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	PcAll.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	SampleVcpc.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	SampleVcpcFast.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	SearchGraphUtils.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)	Checks if an arrowpoint is allowed by background knowledge.
static boolean	Vcpc.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	VcpcAlt.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
static boolean	VcpcFast.isArrowpointAllowed1(Node from, Node to, Knowledge knowledge)
boolean	MeekRulesCpdag.meekR1Locally(Graph graph, Knowledge Knowledge)
static boolean	SearchGraphUtils.meekR1Locally(Graph graph, Knowledge knowledge, IndependenceTest test, int depth)	Orient away from collider.
boolean	MeekRulesCpdag.meekR2(Graph graph, Knowledge Knowledge)
static boolean	SearchGraphUtils.meekR2(Graph graph, Knowledge knowledge)	If
boolean	MeekRulesCpdag.meekR3(Graph graph, Knowledge Knowledge)	Meek's rule R3.
static boolean	SearchGraphUtils.meekR3(Graph graph, Knowledge knowledge)	Meek's rule R3.
boolean	MeekRulesCpdag.meekR4(Graph graph, Knowledge Knowledge)
static boolean	SearchGraphUtils.meekR4(Graph graph, Knowledge knowledge)
void	BossOrig.orientbk(Knowledge bk, Graph graph, List<Node> variables)
static void	SearchGraphUtils.orientCollidersUsingSepsets(SepsetMap set, Knowledge knowledge, Graph graph, boolean verbose, boolean enforceCpdag)	Step C of PC; orients colliders using specified sepset.
void	MeekRulesCpdag.orientUsingMeekRulesLocally(Knowledge Knowledge, Graph graph)
static void	SearchGraphUtils.orientUsingMeekRulesLocally(Knowledge knowledge, Graph graph, IndependenceTest test, int depth)	Orients using Meek rules, double checking noncolliders locally.
static void	SearchGraphUtils.pcdOrientC(IndependenceTest test, Knowledge knowledge, Graph graph)	Performs step C of the algorithm, as indicated on page xxx of CPS, with the modification that X--W--Y is oriented as X-->W<--Y if W is *determined by* the sepset of (X, Y), rather than W just being *in* the sepset of (X, Y).
static void	SearchGraphUtils.pcOrientbk(Knowledge bk, Graph graph, List<Node> nodes)	Orients according to background knowledge.
void	Bes.setKnowledge(Knowledge knowledge)
void	BFci.setKnowledge(Knowledge knowledge)
void	BfciFoo.setKnowledge(Knowledge knowledge)
void	BfciTr.setKnowledge(Knowledge knowledge)
void	Boss.setKnowledge(Knowledge knowledge)
void	BossMb.setKnowledge(Knowledge knowledge)
void	BossMb2.setKnowledge(Knowledge knowledge)
void	BossOrig.setKnowledge(Knowledge knowledge)
void	Bridges.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	Bridges2.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	BridgesOld.setKnowledge(Knowledge knowledge)
void	Ccd.setKnowledge(Knowledge knowledge)
void	CcdMax.setKnowledge(Knowledge knowledge)
void	Cefs.setKnowledge(Knowledge knowledge)	Sets knowledge, to which the algorithm is in fact sensitive.
void	Cfci.setKnowledge(Knowledge knowledge)
void	Cpc.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	CpcOrienter.setKnowledge(Knowledge knowledge)
void	CpcStable.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	DagToPag.setKnowledge(Knowledge knowledge)
void	Fas.setKnowledge(Knowledge knowledge)
void	FasConcurrent.setKnowledge(Knowledge knowledge)	Deprecated.
void	FasDci.setKnowledge(Knowledge knowledge)
void	FasDeterministic.setKnowledge(Knowledge knowledge)
void	FasFdr.setKnowledge(Knowledge knowledge)
void	Fask.setKnowledge(Knowledge knowledge)
void	FaskVote.setKnowledge(Knowledge knowledge)
void	FasLofs.setKnowledge(Knowledge knowledge)
void	FasStableConcurrentFdr.setKnowledge(Knowledge knowledge)
void	Fasts.setKnowledge(Knowledge knowledge)
void	Fci.setKnowledge(Knowledge knowledge)	Sets background knowledge for the search.
void	FciMax.setKnowledge(Knowledge knowledge)	Sets background knowledge for the search.
void	FciOrient.setKnowledge(Knowledge knowledge)
void	Fges.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	FgesMb.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	FgesOrienter.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	GFci.setKnowledge(Knowledge knowledge)
void	Grasp.setKnowledge(Knowledge knowledge)
void	GraspFci.setKnowledge(Knowledge knowledge)
void	GraspTol.setKnowledge(Knowledge knowledge)
void	HbmsBeam.setKnowledge(Knowledge knowledge)
void	Hbsms.setKnowledge(Knowledge knowledge)
void	HbsmsGes.setKnowledge(Knowledge knowledge)
void	IFas.setKnowledge(Knowledge knowledge)
void	ImpliedOrientation.setKnowledge(Knowledge knowledge)	Sets knowledge.
void	Ion2.setKnowledge(Knowledge knowledge)
void	Kpc.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	Lofs2.setKnowledge(Knowledge knowledge)
void	LvBesJoe.setKnowledge(Knowledge knowledge)
void	MeekRules.setKnowledge(Knowledge knowledge)
void	MeekRulesCpdag.setKnowledge(Knowledge Knowledge)
void	MeekRulesRestricted.setKnowledge(Knowledge knowledge)
void	Mimbuild.setKnowledge(Knowledge knowledge)
void	MimbuildTrek.setKnowledge(Knowledge knowledge)
void	MultiFaskV1.setKnowledge(Knowledge knowledge)
void	OrientCollidersMaxP.setKnowledge(Knowledge knowledge)
void	OtherPermAlgs.setKnowledge(Knowledge knowledge)
void	Pc.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	PcAll.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	Pcd.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	PcLocal.setKnowledge(Knowledge knowledge)
void	PcMax.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	PcMb.setKnowledge(Knowledge knowledge)	Sets knowledge, to which the algorithm is in fact sensitive.
void	PcStable.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	PcStableMax.setKnowledge(Knowledge knowledge)	Sets the knowledge specification to be used in the search.
void	PermutationBes.setKnowledge(Knowledge knowledge)
void	PermutationSearch.setKnowledge(Knowledge knowledge)
void	PossibleDsepFci.setKnowledge(Knowledge knowledge)
void	Reorienter.setKnowledge(Knowledge knowledge)	Sets the knowledge.
void	Rfci.setKnowledge(Knowledge knowledge)
void	SampleVcpc.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	SampleVcpcFast.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	ShiftSearch.setKnowledge(Knowledge knowledge)
void	Sp.setKnowledge(Knowledge knowledge)
void	SpFci.setKnowledge(Knowledge knowledge)
void	SuborderSearch.setKnowledge(Knowledge knowledge)
void	SvarFci.setKnowledge(Knowledge knowledge)
void	SvarFciOrient.setKnowledge(Knowledge knowledge)
void	SvarGfci.setKnowledge(Knowledge knowledge)
void	TeyssierScorer.setKnowledge(Knowledge knowledge)
void	TeyssierScorer2.setKnowledge(Knowledge knowledge)
void	TeyssierScorerOpt.setKnowledge(Knowledge knowledge)
void	TimeSeriesLagSearch.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	TsDagToPag.setKnowledge(Knowledge knowledge)
void	TsFges2.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	Vcfas.setKnowledge(Knowledge knowledge)
void	Vcpc.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	VcpcAlt.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.
void	VcpcFast.setKnowledge(Knowledge knowledge)	Sets the knowledge specification used in the search.

Constructors in edu.cmu.tetrad.search with parameters of type Knowledge

Modifier	Constructor	Description
	CpcOrienter(IndependenceTest independenceTest, Knowledge knowledge)
	DagInCPDAGIterator(Graph CPDAG, Knowledge knowledge)
	DagInCPDAGIterator(Graph CPDAG, Knowledge knowledge, boolean allowArbitraryOrientations, boolean allowNewColliders)	The given CPDAG must be a CPDAG.
	HbmsBeam(Graph graph, CovarianceMatrix cov, Knowledge knowledge)
	HbmsBeam(Graph graph, DataSet data, Knowledge knowledge)
	SepsetsPossibleDsep(Graph graph, IndependenceTest test, Knowledge knowledge, int depth, int maxPathLength)

Uses of Knowledge in edu.cmu.tetrad.search.mb

Methods in edu.cmu.tetrad.search.mb that return Knowledge

Modifier and Type	Method	Description
Knowledge	Mmhc.getKnowledge()

Methods in edu.cmu.tetrad.search.mb with parameters of type Knowledge

Modifier and Type	Method	Description
void	Mmhc.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.cmu.tetrad.sem

Methods in edu.cmu.tetrad.sem that return Knowledge

Modifier and Type	Method	Description
Knowledge	LargeScaleSimulation.getKnowledge(Graph graph)

Uses of Knowledge in edu.pitt.dbmi.algo.bayesian.constraint.search

Methods in edu.pitt.dbmi.algo.bayesian.constraint.search with parameters of type Knowledge

Modifier and Type	Method	Description
void	PagSamplingRfci.setKnowledge(Knowledge knowledge)

Uses of Knowledge in edu.pitt.dbmi.algo.resampling

Methods in edu.pitt.dbmi.algo.resampling with parameters of type Knowledge

Modifier and Type	Method	Description
void	GeneralResamplingSearch.setKnowledge(Knowledge knowledge)	Sets the background knowledge.
void	GeneralResamplingTest.setKnowledge(Knowledge knowledge)	Sets the background knowledge.

Uses of Knowledge in edu.pitt.dbmi.algo.resampling.task

Methods in edu.pitt.dbmi.algo.resampling.task that return Knowledge

Modifier and Type	Method	Description
Knowledge	GeneralResamplingSearchRunnable.getKnowledge()

Methods in edu.pitt.dbmi.algo.resampling.task with parameters of type Knowledge

Modifier and Type	Method	Description
void	GeneralResamplingSearchRunnable.setKnowledge(Knowledge knowledge)	Sets the background knowledge.