Uses of Annotation Interface
edu.cmu.tetrad.annotation.Bootstrapping

Packages that use Bootstrapping

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.algorithm.other
edu.cmu.tetrad.algcomparison.algorithm.pairwise

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm

Classes in edu.cmu.tetrad.algcomparison.algorithm with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	AbstractBootstrapAlgorithm	This is a base class for bootstrap algorithms.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Classes in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Dagma	Implements the DAGMA algorithm.
class	DirectLingam	Direct LiNGAM.
class	Fask	FASK algorithm.
class	FaskOrig	Deprecated.
class	IcaLingam	ICA-LiNGAM, the former name of LiNGAM.
class	IcaLingD	ICA-LiNG-D, the former name of LiNG-D.
class	Lingam	IcaLingam class implements the Algorithm and ReturnsBootstrapGraphs interface.
class	LingD	IcaLingD is an implementation of the Algorithm interface that performs the LiNG-D algorithm for discovering causal models for the linear non-Gaussian case where the underlying model might be cyclic.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.multi

Classes in edu.cmu.tetrad.algcomparison.algorithm.multi with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	ImagesBoss	Wraps the IMaGES algorithm for continuous variables.
class	ImagesFges	Wraps the IMaGES algorithm for continuous variables.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Classes in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Boss	BOSS (Best Order Score Search)
class	BossTopK	BOSS-TopK (Best Order Score Search, Top K).
class	Cam	Represents the CAM algorithm, which is a causal additive model search algorithm.
class	Cdnod	CD-NOD wrapper for algcomparison.
class	CdnodBoss	Algcomparison wrapper for the CD-NOD-BOSS search (CdnodBoss): a BOSS backbone with constraint-based collider orientation applied only to unshielded triples that BOSS leaves fully undirected, followed by Meek closure.
class	CdnodPag	CD-NOD wrapper for algcomparison.
class	Cpc	Conservative PC (CPC).
class	Fas	Fast Adjacency Search (FAS)--i.e., the PC adjacency step, which is used in many algorithms.
class	Fges	FGES (the heuristic version).
class	FgesMb	FGES-MB (the heuristic version).
class	Flop	FLOP (Fast Learning of Order and Parents).
class	Grasp	GRaSP (Greedy Relaxations of Sparsest Permutation)
class	Pc	Peter/Clark algorithm (PC).
class	PcAr	Peter/Clark algorithm with adjacency-rescue (PcAR): PC augmented with detection, and optionally repair, of cancelled unfaithful-triangle edges.
class	Pcd	PC.
class	PcMax	PC-Max.
class	PcMb	PC.
class	RestrictedBoss	Implements a restricted version of the BOSS (Best Order Score Search) algorithm that focuses search on a set of target variables and their immediate causes.
class	Sp	SP (Sparsest Permutation)
class	TrekMimic	Algorithm-comparison wrapper for the Trek-MIMIC search.
class	TwoStep	Deprecated.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Classes in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	Bfci	Adjusts FGES-FCI to use a permutation algorithm (such as BOSS-Tuck) to do the initial steps of finding adjacencies and unshielded colliders.
class	BfciBryan	BFCI-Bryan: BOSS followed by the from-scratch, sepset-map-as-state formulation of the gated StarFCI extra-edge-removal step, with sepset RE-SELECTION (a gate-rejected separating set does not retire the pair; the next separating set is tried) and NO saturating step.
class	BfciBryanScore	BFCI-Bryan-Score: BFCI-Bryan (sepset re-selection under the legality gate) with a scoring step: a legal candidate is committed only if the RICF Gaussian BIC of its MAG strictly improves on the committed model's, following Bryan Andrews's "BFCI-Bryan with scoring" pseudocode.
class	BfciC	Adjusts FGES-FCI to use a permutation algorithm (such as BOSS-Tuck) to do the initial steps of finding adjacencies and unshielded colliders.
class	BfciD	Adjusts FGES-FCI to use a permutation algorithm (such as BOSS-Tuck) to do the initial steps of finding adjacencies and unshielded colliders.
class	BossCcd	BOSS-CCD (Cyclic Causal Discovery with a BOSS adjacency superstructure).
class	BossFci	BOSS-FCI, the former name of BFCI.
class	Ccd	CCD (Cyclic Causal Discovery)
class	Cfci	CFCI (Conservative FCI).
class	Cpw	Implements the CPW (Cyclic Pairwise) algorithm for causal discovery from continuous, causally sufficient observational data.
class	Fci	The Fast Causal Inference (FCI) algorithm.
class	FciCyclicPw	FCI-CPW: Run FCI with internally constructed PW-forbidden knowledge, then orient edges using a pairwise left-right rule on standardized data in cases that are safe under no-selection-bias cyclic semantics: Tail–tail (—) edges Orient per pairwise rule. Tail–circle (—o) edges If pairwise prefers x→y, set x→y (symmetrically, if prefers y→x, set y→x). Circle–circle (o–o) edges If pairwise prefers x→y, set x o→y (symmetrically for y→x).
class	FciMax	FCI-Max.
class	Fcit	This class represents the FCI Targeted Testing (FCIT) algorithm, which is variant of the *-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	FcitSl	This class represents the FCI Targeted Testing (FCIT) algorithm, which is variant of the *-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	FcitZm	This class represents the FCI Targeted Testing (FCIT) algorithm, which is variant of the *-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	Gfci	The Fges-FCI class represents the Greedy Fast Causal Inference algorithm, adjusted as in *-FCI.
class	Gmas	GMAS: a latent-variable search that uses no independence tests.
class	GraspFci	GRaSP-FCI, an implentatation of *-FCI using GRaSP.
class	LvBossExperimental	Wrapper for LV-BOSS: the fully score-based latent-variable search that embeds a MAG projection inside a BOSS-style search over orders, scored by the exact RICF Gaussian MAG BIC (MagRicfBicScorer).
class	LvHeuristic	This class represents the FCIT algorithm, which is an implementation of the FGES-FCI algorithm for learning causal structures from observational data using the BOSS algorithm as an initial CPDAG and using all score-based steps afterward.
class	PagSamplingRfci	Jan 29, 2023 3:45:09 PM
class	Rfci	RFCI.
class	RfciBsc	Runs RFCI-BSC, which is RFCI with bootstrap sampling of PAGs.
class	SpFci	Adjusts GFCI to use a permutation algorithm (in this case SP) to do the initial steps of finding adjacencies and unshielded colliders.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.other

Classes in edu.cmu.tetrad.algcomparison.algorithm.other with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	FactorAnalysis	Factor analysis.
class	Glasso	GLASSO.
class	MimbuildBollen	Mimbuild Bollen.
class	MimbuildPca	Mimbuild PCA.

Uses of Bootstrapping in edu.cmu.tetrad.algcomparison.algorithm.pairwise

Classes in edu.cmu.tetrad.algcomparison.algorithm.pairwise with annotations of type Bootstrapping

Modifier and Type	Class	Description
class	FaskPw	FASK-PW (pairwise).
class	R1	R1.
class	R2	R2.
class	R3	R3.
class	Rskew	RSkew.
class	RskewE	RSkewE.
class	Skew	Skew.
class	SkewE	SkewE.
class	Tanh	Tanh.