Class BossFci

java.lang.Object
edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag.BossFci
All Implemented Interfaces:
Algorithm, LatentStructureAlgorithm, ReturnsBootstrapGraphs, TakesCovarianceMatrix, AcceptsKnowledge, HasParameters, TakesIndependenceWrapper, TakesScoreWrapper, TetradSerializable, Serializable
@Bootstrapping public class BossFci extends AbstractBootstrapAlgorithm implements Algorithm, TakesScoreWrapper, TakesIndependenceWrapper, AcceptsKnowledge, ReturnsBootstrapGraphs, TakesCovarianceMatrix, LatentStructureAlgorithm
BOSS-FCI, the former name of BFCI.

Backward compatibility only. This class is retained under its original name so that sessions saved by Tetrad 7.6.10 and earlier, which refer to it by this class name, continue to load. Its registration annotations are commented out, so it does not appear in the algorithm chooser; new work should use Bfci. Every method delegates to Bfci, so a restored session runs the same search as the BFCI box, including any corrections made to it since 7.6.10.

Version:
$Id: $Id
Author:
josephramsey
See Also:

  • Constructor Details

    • BossFci

      public BossFci()
      No-arg constructor. Used for reflection; do not delete.

    • BossFci

      public BossFci(IndependenceWrapper test, ScoreWrapper score)
      Constructs a new BOSS-FCI algorithm using the given test and score.
      Parameters:
      test - the independence test to use
      score - the score to use

  • Method Details

    • runSearch

      public Graph runSearch(DataModel dataModel, Parameters parameters) throws InterruptedException
      Runs the search on the given data by delegating to the successor algorithm and returns the resulting graph.
      Parameters:
      dataModel - the data to search over.
      parameters - the parameters of the search.
      Returns:
      the graph the successor returns.
      Throws:
      InterruptedException - if the search is interrupted.

    • getComparisonGraph

      public Graph getComparisonGraph(Graph graph)
      Returns that graph that the result should be compared to.
      Specified by:
      getComparisonGraph in interface Algorithm
      Parameters:
      graph - The true directed graph, if there is one.
      Returns:
      The comparison graph.

    • getDescription

      public String getDescription()
      Returns a short, one-line description of this algorithm. This will be printed in the report.
      Specified by:
      getDescription in interface Algorithm
      Returns:
      This description.

    • getDataType

      public DataType getDataType()
      Returns the data type that the search requires, whether continuous, discrete, or mixed.
      Specified by:
      getDataType in interface Algorithm
      Returns:
      This type.

    • getParameters

      public List<String> getParameters()
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not
      Specified by:
      getParameters in interface HasParameters
      Returns:
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not already defined they'll need to be defined there.

    • getKnowledge

      public Knowledge getKnowledge()
      Returns a knowledge object.
      Specified by:
      getKnowledge in interface AcceptsKnowledge
      Returns:
      a knowledge object.

    • setKnowledge

      public void setKnowledge(Knowledge knowledge)
      Sets a knowledge object.
      Specified by:
      setKnowledge in interface AcceptsKnowledge
      Parameters:
      knowledge - a knowledge object.

    • getIndependenceWrapper

      public IndependenceWrapper getIndependenceWrapper()
      Returns the independence wrapper.
      Specified by:
      getIndependenceWrapper in interface TakesIndependenceWrapper
      Returns:
      the independence wrapper.

    • setIndependenceWrapper

      public void setIndependenceWrapper(IndependenceWrapper test)
      Sets the independence wrapper.
      Specified by:
      setIndependenceWrapper in interface TakesIndependenceWrapper
      Parameters:
      test - the independence wrapper.

    • getScoreWrapper

      public ScoreWrapper getScoreWrapper()
      Returns the score wrapper.
      Specified by:
      getScoreWrapper in interface TakesScoreWrapper
      Returns:
      the score wrapper.

    • setScoreWrapper

      public void setScoreWrapper(ScoreWrapper score)
      Sets the score wrapper.
      Specified by:
      setScoreWrapper in interface TakesScoreWrapper
      Parameters:
      score - the score wrapper.