Uses of Interface
edu.cmu.tetrad.algcomparison.score.ScoreWrapper

Packages that use ScoreWrapper

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.score
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.search	This package contains classes for causal graph search algorithms.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type ScoreWrapper

Modifier and Type	Method	Description
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score)	Creates an algorithm.
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score, Graph externalGraph)	Creates an algorithm.
void	MultiDataSetAlgorithm.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	DirectLingam.getScoreWrapper()
ScoreWrapper	Fask.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this class.
ScoreWrapper	FaskOrig.getScoreWrapper()	Deprecated. Retrieves the ScoreWrapper object associated with this class.

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	DirectLingam.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this DirectLingam instance.
void	Fask.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the object.
void	FaskOrig.setScoreWrapper(ScoreWrapper score)	Deprecated. Sets the score wrapper for the object.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	DirectLingam(ScoreWrapper score)	Constructor for DirectLingam.
	Fask(ScoreWrapper score)	Constructs a new Fask object with the given ScoreWrapper.
	FaskOrig(IndependenceWrapper test, ScoreWrapper score)	Deprecated. Constructor for Fask.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	FaskPool.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	FaskVote.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Images.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	ImagesBoss.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	ImagesFges.getScoreWrapper()	Retrieves the score wrapper object.
ScoreWrapper	Ion.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	FaskConcatenated.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FaskPool.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FaskVote.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FciIod.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FgesConcatenated.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	Images.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	ImagesBoss.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	ImagesFges.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	Ion.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type ScoreWrapper

Modifier	Constructor	Description
	FaskConcatenated(ScoreWrapper score, IndependenceWrapper test)	Constructor for FaskConcatenated.
	FaskPool(ScoreWrapper score)	Constructor for FaskPool.
	FaskVote(ScoreWrapper score)	Constructor for FaskVote.
	FgesConcatenated(ScoreWrapper score)	Constructor for FgesConcatenated.
	FgesConcatenated(ScoreWrapper score, boolean compareToTrue)	Constructor for FgesConcatenated.
	FgesConcatenated(ScoreWrapper score, Algorithm externalGraph)	Constructor for FgesConcatenated.
	Images(ScoreWrapper score)	Constructor for ImagesBoss.
	ImagesBoss(ScoreWrapper score)	Constructor for ImagesBoss.
	ImagesFges(ScoreWrapper score)	Constructor for Images.
	Ion(IndependenceWrapper test, ScoreWrapper score)	Constructor for Ion.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	Boss.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	BossCdnodScore.getScoreWrapper()
ScoreWrapper	BossTopK.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	CdnodBoss.getScoreWrapper()
ScoreWrapper	CdnodPag.getScoreWrapper()
ScoreWrapper	Cstar.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Fges.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	FgesMb.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Grasp.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	RestrictedBoss.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Sp.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	Boss.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	BossCdnodScore.setScoreWrapper(ScoreWrapper score)
void	BossTopK.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	CdnodBoss.setScoreWrapper(ScoreWrapper score)
void	CdnodPag.setScoreWrapper(ScoreWrapper score)
void	Cstar.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Fges.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	FgesMb.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Grasp.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	RestrictedBoss.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Sp.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Boss(ScoreWrapper score)	Constructs a new BOSS algorithm with the given score.
	BossCdnodScore(ScoreWrapper score)	Constructs a BossCdnodScore instance with a specified ScoreWrapper.
	BossTopK(ScoreWrapper score)	Constructs a new BOSS-TopK algorithm with the given score.
	CdnodBoss(ScoreWrapper score)	Constructs the wrapper with a score wrapper for the BOSS backbone.
	CdnodBoss(ScoreWrapper score, IndependenceWrapper test)	Constructs the wrapper with both a score wrapper (for the BOSS backbone) and an independence wrapper (for the collider-orientation step).
	Cstar(IndependenceWrapper test, ScoreWrapper score)	Constructor for Cstar.
	Fges(ScoreWrapper score)	Constructor for Fges.
	FgesMb(ScoreWrapper score)	Constructor for FgesMb.
	Grasp(IndependenceWrapper test, ScoreWrapper score)	Constructor for Grasp.
	RestrictedBoss(ScoreWrapper score)	Constructor for RestrictedBoss.
	Sp(ScoreWrapper score)	Constructor for Sp.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	Bfci.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BfciBryan.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BfciBryanScore.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BfciC.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BfciD.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BfciScoreCheck.getScoreWrapper()	Retrieves the ScoreWrapper associated with this algorithm.
ScoreWrapper	BossCcd.getScoreWrapper()	Returns the ScoreWrapper object associated with this instance.
ScoreWrapper	BossFci.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	BossPod.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	DmFcit.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Fcit.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	FcitMagMarkov.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	FcitMarkov.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	FcitSl.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	FcitSlScoreCheck.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	FcitZm.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	Gfci.getScoreWrapper()	Retrieves the ScoreWrapper associated with this instance.
ScoreWrapper	GfciOld.getScoreWrapper()	Retrieves the ScoreWrapper associated with this instance.
ScoreWrapper	Gmas.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	GraspFci.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	LvHeuristic.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this method.
ScoreWrapper	SpFci.getScoreWrapper()	Retrieves the ScoreWrapper object associated with this algorithm.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	Bfci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BfciBryan.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BfciBryanScore.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BfciC.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BfciD.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BfciScoreCheck.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for this algorithm.
void	BossCcd.setScoreWrapper(ScoreWrapper score)	Updates the score wrapper for this algorithm.
void	BossFci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	BossPod.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	DmFcit.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Fcit.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	FcitMagMarkov.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	FcitMarkov.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	FcitSl.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	FcitSlScoreCheck.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	FcitZm.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	Gfci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	GfciOld.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	Gmas.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	GraspFci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	LvHeuristic.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper for the algorithm.
void	SpFci.setScoreWrapper(ScoreWrapper score)	Sets the ScoreWrapper object for the algorithm.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Bfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciBryan(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Bryan algorithm using the given test and score.
	BfciBryanScore(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Bryan algorithm using the given test and score.
	BfciC(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciD(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciScoreCheck(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Score-Check algorithm using the given test and score.
	BossCcd(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-CCD algorithm with the given independence test and score.
	BossFci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	Fcit(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitMagMarkov(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitMarkov(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitSl(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitSlScoreCheck(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitZm(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	Gfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of FGES-FCI with the given IndependenceWrapper and ScoreWrapper.
	GfciOld(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of GFCI with the given IndependenceWrapper and ScoreWrapper.
	Gmas(ScoreWrapper score)	Constructs a GMAS algorithm with the given score.
	GraspFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for GraspFci.
	LvHeuristic(ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	SpFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for the SpFci class.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.score

Subinterfaces of ScoreWrapper in edu.cmu.tetrad.algcomparison.score

Modifier and Type	Interface	Description
interface	BlockScoreWrapper	Represents an interface for scoring data models using predefined block structures.

Classes in edu.cmu.tetrad.algcomparison.score that implement ScoreWrapper

Modifier and Type	Class	Description
class	BasisFunctionBgeScore	Wrapper for BF-BGe, the BGe (Normal-Wishart marginal likelihood) score over the basis-function embedding that BF-BIC uses.
class	BasisFunctionBicScore	Wrapper for Basis Function BIC Score (Basis-BIC) version.
class	BasisFunctionBicScoreTabular	Wrapper for the full-sample (tabular) Basis Function BIC Score, delegating to BasisFunctionBicScoreFullSample.
class	BdeuScore	Wrapper for Fisher Z test.
class	BfBlocksBicScore	Wrapper for Blocks BIC Score (Blocks-BIC) version.
class	BgeScore	Wrapper for the BGe (Bayesian Gaussian equivalent) score, the Gaussian analog of BDeu: the local score is the exact log marginal likelihood of a family under a Normal-Wishart prior rather than a BIC-penalized maximum likelihood.
class	BlocksBicScore	Wrapper for Blocks BIC Score (Blocks-BIC) version.
class	ConditionalGaussianBicScore	Wrapper for Fisher Z test.
class	DegenerateGaussianBgeScore	Wrapper for DG-BGe, the BGe (Normal-Wishart marginal likelihood) score over the degenerate Gaussian indicator embedding that DG-BIC uses.
class	DegenerateGaussianBicScore	Wrapper for degenerate Gaussian BIC score
class	DiscreteBicScore	Wrapper for Discrete BIC test.
class	EbicScore	Wrapper for linear, Gaussian Extended BIC score (Chen and Chen).
class	FfMl	Wrapper for FF-ML MIxed Marginal Likelihood Score.
class	FfMlContinuous	Wrapper for FF Marginal Likelihood Score.
class	GicScores	The GicScores class is an implementation of the ScoreWrapper interface that calculates the Generalized Information Criterion (GIC) scores for a given data model.
class	HeavyTailSemBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	HuangMarginalLikelihoodScore	// * Wrapper for Huang Marginal Likelihood Score.
final class	InstanceAugmentedSemBicScoreWrapper	Wrapper for InstanceAugmentedSemBicScore that: - pulls the testing DataSet from Params.TESTING_DATA (injected by the algorithm wrapper), - takes the instance row from Params.INSTANCE_ROW, - aligns columns by training variable names, - uses alpha from Params.IS_ALPHA (default 1.0).
final class	IsBDeuScoreWrapper	Wrapper for ISBDeuScore (discrete).
class	KcvBicScore	Wrapper for KVC BIC score.
class	KernelMarginalLikelihoodScore	Wrapper for Kernel Marginal Likelihood Score.
class	MagDgBicScore	Wrapper for degenerate Gaussian BIC score
class	MSepScore	Wrapper for Fisher Z test.
class	MVPBicScore	Deprecated.
class	PoissonPriorScore	Wrapper for the Poisson prior score (Bryan)
class	RankBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	RffBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	SemBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	TRffBicScore	The TRffBicScore class is a scoring mechanism designed to evaluate the fit and complexity of a data model.
class	ZhangShenBoundScore	Wrapper for linear, Gaussian Extended BIC score (Chen and Chen).

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.utils

Subinterfaces of ScoreWrapper in edu.cmu.tetrad.algcomparison.utils

Modifier and Type	Interface	Description
interface	MultiDataSetScoreWrapper	A score wrapper that can construct its per-data-set scores jointly, coordinating any data-dependent representation choices across the data sets.

Classes in edu.cmu.tetrad.algcomparison.utils that implement ScoreWrapper

Modifier and Type	Class	Description
final class	PooledScoreWrapper	A score wrapper that pools several data sets into one IMaGES score built from an inner score wrapper.

Methods in edu.cmu.tetrad.algcomparison.utils that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	PooledScoreWrapper.getInner()	Returns the score wrapper that is built on each pooled data set.
ScoreWrapper	TakesScoreWrapper.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	TakesScoreWrapper.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Constructors in edu.cmu.tetrad.algcomparison.utils with parameters of type ScoreWrapper

Modifier	Constructor	Description
	PooledScoreWrapper(ScoreWrapper inner, List<DataModel> defaultDataSets)	Constructs a pooled score wrapper.

Uses of ScoreWrapper in edu.cmu.tetrad.search

Constructors in edu.cmu.tetrad.search with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Cstar(IndependenceWrapper test, ScoreWrapper score, Parameters parameters)	Constructor.
	FaskPool(List<DataSet> dataSets, ScoreWrapper score)	Constructs a pooled-FASK search from the supplied datasets and score wrapper.
	FaskVote(List<DataSet> dataSets, ScoreWrapper score)	Constructs a FASK-voting search from the supplied datasets, score wrapper, and independence wrapper.
	PooledAdjacencySearch(ScoreWrapper score)	Constructs the search with the given score wrapper (used only by the IMAGES method; may be null for the other methods).