Uses of Interface
edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper

Packages that use IndependenceWrapper

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.independence
edu.cmu.tetrad.algcomparison.statistic
edu.cmu.tetrad.algcomparison.sweep
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.search	This package contains classes for causal graph search algorithms.
edu.cmu.tetrad.search.harness

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score)	Creates an algorithm.
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score, Graph externalGraph)	Creates an algorithm.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	FaskOrig.getIndependenceWrapper()	Deprecated. Retrieves the IndependenceWrapper associated with this object.

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	FaskOrig.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Deprecated. Sets the independence wrapper for the object.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskOrig(IndependenceWrapper test, ScoreWrapper score)	Deprecated. Constructor for Fask.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	FaskConcatenated.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FciIod.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Ion.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	FaskConcatenated.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FciIod.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Ion.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	ImagesBoss.setIndTestWrapper(IndependenceWrapper test)	Not used.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskConcatenated(ScoreWrapper score, IndependenceWrapper test)	Constructor for FaskConcatenated.
	FciIod(IndependenceWrapper test)	Constructor for FciIod.
	Ion(IndependenceWrapper test, ScoreWrapper score)	Constructor for Ion.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Cdnod.getIndependenceWrapper()	Returns the independence wrapper of the algorithm.
IndependenceWrapper	CdnodBoss.getIndependenceWrapper()
IndependenceWrapper	CdnodPag.getIndependenceWrapper()	Retrieves the configured IndependenceWrapper instance associated with this object.
IndependenceWrapper	Cpc.getIndependenceWrapper()	Retrieves the IndependenceWrapper associated with this object.
IndependenceWrapper	Cstar.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Fas.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Grasp.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Pc.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PcAr.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PcMax.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PcMb.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Pcmci.getIndependenceWrapper()	Retrieves the current instance of IndependenceWrapper associated with this object.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Cdnod.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper of the algorithm.
void	CdnodBoss.setIndependenceWrapper(IndependenceWrapper test)
void	CdnodPag.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper test instance for this object.
void	Cpc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	Cstar.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Fas.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Grasp.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Pc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	PcAr.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	PcMax.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	PcMb.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Pcmci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper instance to be used for the PCMCI algorithm.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cdnod(IndependenceWrapper test)	Constructs a new instance of the Cdnod class using the provided IndependenceWrapper instance.
	CdnodBoss(ScoreWrapper score, IndependenceWrapper test)	Constructs the wrapper with both a score wrapper (for the BOSS backbone) and an independence wrapper (for the collider-orientation step).
	CdnodPag(IndependenceWrapper test)	Constructs a new instance of Cdnod with the specified IndependenceWrapper.
	Cpc(IndependenceWrapper test)	This class represents the constructor for the Cpc class.
	Cstar(IndependenceWrapper test, ScoreWrapper score)	Constructor for Cstar.
	Fas(IndependenceWrapper test)	Constructor for Fas.
	Grasp(IndependenceWrapper test, ScoreWrapper score)	Constructor for Grasp.
	Pc(IndependenceWrapper test)	Constructor for Pc.
	PcAr(IndependenceWrapper test)	Constructor for PcAr.
	PcMax(IndependenceWrapper test)	Constructor for PcMax.
	PcMb(IndependenceWrapper type)	Constructor for PcMb.
	Pcmci(IndependenceWrapper test)	Constructs an instance of the Pcmci class with a specified independence test.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Bfci.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this BOSS-FCI algorithm.
IndependenceWrapper	BfciBryan.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this algorithm.
IndependenceWrapper	BfciBryanScore.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this algorithm.
IndependenceWrapper	BfciC.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this BOSS-FCI algorithm.
IndependenceWrapper	BfciD.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this BOSS-FCI algorithm.
IndependenceWrapper	BfciScoreCheck.getIndependenceWrapper()	Returns the IndependenceWrapper associated with this algorithm.
IndependenceWrapper	BossCcd.getIndependenceWrapper()	Returns the IndependenceWrapper object associated with this instance.
IndependenceWrapper	BossFci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Ccd.getIndependenceWrapper()	Returns the IndependenceWrapper object associated with this instance.
IndependenceWrapper	Cfci.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	Cpw.getIndependenceWrapper()	Retrieves the current instance of the IndependenceWrapper used for conditional independence testing in the algorithm.
IndependenceWrapper	Dm.getIndependenceWrapper()
IndependenceWrapper	DmFcit.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	DmPc.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Fci.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	FciCyclicPw.getIndependenceWrapper()	Retrieves the current instance of the IndependenceWrapper used for conditional independence testing in the algorithm.
IndependenceWrapper	FciMax.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	Fcit.getIndependenceWrapper()
IndependenceWrapper	FcitMagMarkov.getIndependenceWrapper()
IndependenceWrapper	FcitMarkov.getIndependenceWrapper()
IndependenceWrapper	FcitSl.getIndependenceWrapper()
IndependenceWrapper	FcitSlScoreCheck.getIndependenceWrapper()
IndependenceWrapper	FcitZm.getIndependenceWrapper()
IndependenceWrapper	Gfci.getIndependenceWrapper()	Returns the independence wrapper associated with this instance.
IndependenceWrapper	GfciOld.getIndependenceWrapper()	Returns the independence wrapper associated with this instance.
IndependenceWrapper	GraspFci.getIndependenceWrapper()	Retrieves the IndependenceWrapper object associated with this method.
IndependenceWrapper	Icd.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	IsGfci.getIndependenceWrapper()
IndependenceWrapper	Rfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	SpFci.getIndependenceWrapper()	Retrieves the IndependenceWrapper associated with this algorithm.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Bfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BfciBryan.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BfciBryanScore.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BfciC.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BfciD.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BfciScoreCheck.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for this algorithm.
void	BossCcd.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Updates the independence wrapper for this algorithm.
void	BossFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Ccd.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Updates the independence wrapper for this algorithm.
void	Cfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object associated with this method.
void	Cpw.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper instance used for conditional independence testing in the algorithm.
void	Dm.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	DmFcit.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	DmPc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Fci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object associated with this method.
void	FciCyclicPw.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper instance used for conditional independence testing in the algorithm.
void	FciMax.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object associated with this method.
void	Fcit.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FcitMagMarkov.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FcitMarkov.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FcitSl.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FcitSlScoreCheck.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	FcitZm.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	Gfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	GfciOld.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	GraspFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Icd.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	IsGfci.setIndependenceWrapper(IndependenceWrapper independenceWrapper)
void	Rfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	SpFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper object for the algorithm.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Bfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciBryan(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Bryan algorithm using the given test and score.
	BfciBryanScore(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Bryan algorithm using the given test and score.
	BfciC(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciD(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	BfciScoreCheck(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI-Score-Check algorithm using the given test and score.
	BossCcd(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-CCD algorithm with the given independence test and score.
	BossFci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BOSS-FCI algorithm using the given test and score.
	Ccd(IndependenceWrapper test)	Constructs a new CCD algorithm with the given independence test.
	Cfci(IndependenceWrapper test)	Constructor.
	Cpw(IndependenceWrapper test)	Constructor for the Cpw class that initializes the algorithm with a specified independence test wrapper.
	Dm(IndependenceWrapper test)	Constructs the algorithm with the supplied independence wrapper.
	Fci(IndependenceWrapper test)	Constructor.
	FciCyclicPw(IndependenceWrapper test)	Constructor for the FciCyclicPw class that initializes the algorithm with a specified independence test wrapper.
	FciMax(IndependenceWrapper test)	Constructor.
	Fcit(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitMagMarkov(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitMarkov(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitSl(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitSlScoreCheck(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	FcitZm(IndependenceWrapper test, ScoreWrapper score)	FCIT is a class that represents a FCIT algorithm.
	Gfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of FGES-FCI with the given IndependenceWrapper and ScoreWrapper.
	GfciOld(IndependenceWrapper test, ScoreWrapper score)	Constructs a new instance of GFCI with the given IndependenceWrapper and ScoreWrapper.
	GraspFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for GraspFci.
	Icd(IndependenceWrapper test)	Constructor.
	IsGfci(IndependenceWrapper test)	Constructor for Fges.
	Rfci(IndependenceWrapper test)	Creates an instance of Rfci with the given IndependenceWrapper.
	SpFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for the SpFci class.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.independence

Subinterfaces of IndependenceWrapper in edu.cmu.tetrad.algcomparison.independence

Modifier and Type	Interface	Description
interface	BlockIndependenceWrapper	An interface that extends functionality of the IndependenceWrapper and HasParameters interfaces by adding support for block-specific configuration in independence testing.

Classes in edu.cmu.tetrad.algcomparison.independence that implement IndependenceWrapper

Modifier and Type	Class	Description
class	BasisExpandedGcm	Wrapper for BE-GCM (Basis-Expanded Generalised Covariance Measure Test).
class	BasisFunctionBlocksIndTest	Wrapper for BF-Blocks-Test.
class	BasisFunctionLrt	Wrapper for BF-LRT (Basis Function Likelihood Ratio Test).
class	BlocksIndTest	Deprecated.
class	BlocksIndTestLemma10	Deprecated.
class	BlocksIndTestTs	Wrapper for BF-Blocks-Test.
class	CciTest	Wrapper for Daudin Conditional Independence test.
class	ChiSquare	Wrapper for Fisher Z test.
class	ClFisherZPython	An IndependenceWrapper that runs the Fisher Z conditional independence test implemented in the Python causal-learn library, bridging it into Tetrad's IndependenceTest framework.
class	ClKciPython	An IndependenceWrapper that runs the Kernel-based Conditional Independence (KCI) test implemented in the Python causal-learn library, bridging it into Tetrad's IndependenceTest framework.
class	ClRcitPython	An IndependenceWrapper that runs the Randomized Conditional Independence Test (RCIT) implemented in the Python causal-learn library, bridging it into Tetrad's IndependenceTest framework.
class	ConditionalGaussianLrt	Wrapper for Fisher Z test.
class	Cord	Wrapper for the CORD conditional independence test backed by Eric's engine (IndTestCordEric): an omnibus, orthogonal rank-score test of Y ⊥ Z | X that is sensitive to higher-moment, tail, and co-volatility dependence which a covariance-based test (e.g., Fisher Z) cannot see.
class	DegenerateGaussianLrt	Wrapper for DG LRT.
class	DgBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.
class	EquivalenceTest	Wrapper for the equivalence (TOST) test on the Fisher Z partial correlation.
class	FfCi	Wrapper for FFCI test with a reduced parameter set.
class	FfCiContinuous	Wrapper for FF-CI-Continuous test.
class	FisherZ	Wrapper for Fisher Z test.
class	Gcm	Wrapper for KCI test.
class	Gin	Wrapper for GIN (Generalized Independent Noise) residual-independence test.
class	GSquare	Wrapper for Fisher Z test.
class	Kci	Wrapper for KCI test.
class	MinimaxCITest	Wrapper for Minimax binning test.
class	MSeparationTest	Wrapper for M-separation test.
class	MultinomialLogisticRegressionWald	Wrapper for Fisher Z test.
class	Mvplrt	Deprecated.
class	PoissonBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.
class	ProbabilisticTest	Dec 17, 2018 3:44:46 PM
class	RankIndependenceTestLemma10Singletons	Deprecated.
class	RankIndependenceTestTs	Rank Independence Test TS, the former name of the test now called Rank Independence Test TS Singletons.
class	RankIndependenceTestTsSingletons	Deprecated.
class	RankIndependenceTestWilkesSingletons	Deprecated.
class	Rcit	Wrapper for RCIT test.
class	SemBicTest	The SemBicTest class implements the IndependenceWrapper interface and represents a test for independence based on SEM BIC algorithm.
class	StratifiedRank	Wrapper for the stratified (domain-pooled) rank conditional independence test, IndTestStratifiedRank -- the Phase 1 test of LCD-NOD (Dong, Dai, Ng, Spirtes, and Zhang, ICML 2026).
class	TrekSeparationBlocksIndependence	Wrapper for Rank independence test.
final class	TRffLrTest	Wrapper for the TRFF likelihood-ratio CI test built on TRffBicScore.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.statistic

Constructors in edu.cmu.tetrad.algcomparison.statistic with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	MarkovCheckAdPasses(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAdPassesBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAndersonDarlingP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckAndersonDarlingPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckBinomialP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckBinomialPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckFdrCutoffP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckFractionDependentH0(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckFractionDependentH1(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Anderson Darling P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKolmogorovSmirnoffP(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKolmogorovSmirnoffPBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKsPasses(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	MarkovCheckKsPassesBestOf10(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the Kolmogorov-Smirnoff P value for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	McGetNumTestsH0(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the number of tests for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).
	McGetNumTestsH1(IndependenceWrapper independenceWrapper, ConditioningSetType conditioningSetType, Parameters mcParameters)	Calculates the number of tests for the Markov check of whether the p-values for the estimated graph are distributed as U(0, 1).

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.sweep

Methods in edu.cmu.tetrad.algcomparison.sweep with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	ParameterSweep.setMarkovCheckTest(IndependenceWrapper markovCheckTest)	Sets the test used to Markov-check each setting's point graph, or null to skip Markov checking.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.utils

Classes in edu.cmu.tetrad.algcomparison.utils that implement IndependenceWrapper

Modifier and Type	Class	Description
final class	PooledIndependenceWrapper	The test-side counterpart of PooledScoreWrapper: builds the inner test on each pooled data set and combines them with IndTestMulti using Fisher's method (default) or Tippett's method on the per-data-set p-values, per Params.POOLED_TEST_METHOD (data sets are assumed independent of one another, e.g.

Methods in edu.cmu.tetrad.algcomparison.utils that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	TakesIndependenceWrapper.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PooledIndependenceWrapper.getInner()	Returns the independence wrapper that is built on each pooled data set.

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	TakesIndependenceWrapper.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.

Constructors in edu.cmu.tetrad.algcomparison.utils with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	PooledIndependenceWrapper(IndependenceWrapper inner, List<DataModel> defaultDataSets)	Constructs a pooled independence wrapper.

Uses of IndependenceWrapper in edu.cmu.tetrad.search

Methods in edu.cmu.tetrad.search with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
static MarkovCheckNullReference.Result	MarkovCheckNullReference.compute(DataSet data, Graph graph, IndependenceWrapper testWrapper, Parameters parameters, ConditioningSetType conditioningSetType, MarkovCheckNullReference.SimulatorType simulator, int numDraws, int sampleSize, long baseSeed, TrainedDagSimulatorGNM.Params gnmParams)	Convenience overload taking an IndependenceWrapper and Parameters, matching how the Markov-check test is configured in algcomparison and in py-tetrad's TetradSearch.

Constructors in edu.cmu.tetrad.search with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cstar(IndependenceWrapper test, ScoreWrapper score, Parameters parameters)	Constructor.

Uses of IndependenceWrapper in edu.cmu.tetrad.search.harness

Method parameters in edu.cmu.tetrad.search.harness with type arguments of type IndependenceWrapper

Modifier and Type	Method	Description
CiTestHarness.Result	CiTestHarness.run(Graph trueGraph, DataSet data, List<IndependenceWrapper> tests, Parameters params, CiTestHarness.Config cfg)	Executes a series of independence tests on a dataset using a given true graph and configuration, and evaluates the results against predefined criteria.