Uses of Package
edu.cmu.tetrad.util

Packages that use edu.cmu.tetrad.util

Package	Description
edu.cmu.tetrad.algcomparison
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.cluster
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.mixed
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.algorithm.other
edu.cmu.tetrad.algcomparison.algorithm.pairwise
edu.cmu.tetrad.algcomparison.graph
edu.cmu.tetrad.algcomparison.independence
edu.cmu.tetrad.algcomparison.score
edu.cmu.tetrad.algcomparison.simulation
edu.cmu.tetrad.algcomparison.statistic
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.bayes
edu.cmu.tetrad.calculator.expression
edu.cmu.tetrad.classify
edu.cmu.tetrad.cluster
edu.cmu.tetrad.cluster.metrics
edu.cmu.tetrad.data
edu.cmu.tetrad.data.simulation
edu.cmu.tetrad.graph
edu.cmu.tetrad.regression
edu.cmu.tetrad.search	Contains classes for searching for (mostly structural) causal models given data.
edu.cmu.tetrad.search.score	Contains classes for various sorts of scores for running score-based algorithms.
edu.cmu.tetrad.search.test	Contains classes for running conditional independence tests for various sorts of data.
edu.cmu.tetrad.search.utils	Contains some utility classes for search algorithms.
edu.cmu.tetrad.search.work_in_progress	Contains some classes that aren't ready for prime time.
edu.cmu.tetrad.sem
edu.cmu.tetrad.study.gene.tetrad.gene.graph	Contains an editable display graph for (small) lag graphs.
edu.cmu.tetrad.study.gene.tetrad.gene.history	Implements a time-series simulation engine suitable for time-series gene expression studies.
edu.cmu.tetrad.study.gene.tetrad.gene.simulation	Contains classes for generating simulations of expression levels over a collection of genes.
edu.cmu.tetrad.study.gene.tetradapp.model
edu.cmu.tetrad.study.performance
edu.cmu.tetrad.util
edu.cmu.tetrad.util.dist

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.cluster

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.mixed

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.multi

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.other

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.pairwise

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.graph

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.independence

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.score

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.simulation

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.statistic

Class	Description
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.utils

Class	Description
Parameters	Stores a list of named parameters with their values.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.bayes

Class	Description
Im	Tagging interface for instantiated models.
Pm	Tagging interface for parametric models.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
Vector	Vector wrapping matrix library.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.calculator.expression

Class	Description
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.classify

Class	Description
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.cluster

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.cluster.metrics

Class	Description
Vector	Vector wrapping matrix library.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.data

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
Vector	Vector wrapping matrix library.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.data.simulation

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.graph

Class	Description
Parameters	Stores a list of named parameters with their values.
PointXy	Stores a (x, y) point without having to use awt classes.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
TetradSerializableExcluded	Interface to tag a class that should be exluded from the set of TetradSerializable classes, even if it implements the TetradSerializable interface.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.regression

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
TextTable	Stores a 2D array of Strings for printing out tables.
Vector	Vector wrapping matrix library.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.score

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.test

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.utils

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.work_in_progress

Class	Description
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.sem

Class	Description
Im	Tagging interface for instantiated models.
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
Parameters	Stores a list of named parameters with their values.
Pm	Tagging interface for parametric models.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
Vector	Vector wrapping matrix library.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.graph

Class	Description
Parameters	Stores a list of named parameters with their values.
PointXy	Stores a (x, y) point without having to use awt classes.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.history

Class	Description
PointXy	Stores a (x, y) point without having to use awt classes.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.simulation

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetradapp.model

Class	Description
Parameters	Stores a list of named parameters with their values.
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.performance

Class	Description
TextTable	Stores a 2D array of Strings for printing out tables.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.util

Class	Description
AlgorithmDescriptions	Algorithm descriptions.
DefaultTetradLoggerConfig	Logger configuration.
DefaultTetradLoggerConfig.DefaultEvent	A default implementation of the event.
Function	Interface for a single-argument, double-valued function that can be passed to mathematical routines.
IndependenceTestDescriptions	May 14, 2019 11:25:02 AM
LogUtils	Sets up streams for logging via the Java logging API.
Matrix	Wraps the Apache math3 linear algebra library for most uses in Tetrad.
MillisecondTimes.Type	An enum for the type of time.
NumberFormatUtil	Provides an application-wide "memory" of the number format to be used.
PagCache	A cache for storing PAGs so that the only need to be calculated once per DAG.
ParamDescription	Describes a parameter.
ParamDescriptions	Stores descriptions of the parameters for the simulation box.
Parameters	Stores a list of named parameters with their values.
PartialCorrelationPdf	Frequency function of partial correlation r(12|34...k), assuming that the true partial correlation is equal to zero.
Point	Implements an n-dimensional point.
PointXy	Stores a (x, y) point without having to use awt classes.
RandomUtil	Provides a common random number generator to be used throughout Tetrad, to avoid problems that happen when random number generators are created more often than once per millisecond.
ScoreDescriptions	May 14, 2019 11:23:54 AM
TaskManager	This cancels all processes that check the TaskManager.getInstance().isCanceled() method.
TetradLogger	Represents a logging utility used throughout tetrad.
TetradLogger.EmptyConfig	Represents an empty configuration for the logger.
TetradLoggerConfig	Represents the configuration for the logger.
TetradLoggerConfig.Event	Represents an event which is just an id and a description.
TetradLoggerEvent	An event associated with the TetradLoggerListener.
TetradLoggerListener	A listener for tetrad's logger.
TetradProperties	Nov 10, 2017 4:14:31 PM
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
TextTable.Delimiter	An enum of delimiters.
Vector	Vector wrapping matrix library.
Version	Represents the getModel Tetrad version.

Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.util.dist

Class	Description
TetradSerializable	Interface to tag a class that is part of the set of serializable classes in the Tetrad API.