Uses of Class edu.cmu.tetrad.graph.Triple (tetrad-lib 7.6.7-SNAPSHOT API)

Packages that use Triple

Package

Description

edu.cmu.tetrad.graph

edu.cmu.tetrad.search

Contains classes for searching for (mostly structural) causal models given data.

edu.cmu.tetrad.search.utils

Contains some utility classes for search algorithms.

edu.cmu.tetrad.search.work_in_progress

Contains some classes that aren't ready for prime time.

edu.cmu.tetrad.util

Uses of Triple in edu.cmu.tetrad.graph

Methods in edu.cmu.tetrad.graph that return Triple

Modifier and Type

Method

Description

static Triple

Triple.serializableInstance()

Generates a simple exemplar of this class to test serialization.

Methods in edu.cmu.tetrad.graph that return types with arguments of type Triple

Modifier and Type

Method

Description

Set<Triple>

Dag.getAmbiguousTriples()

Returns a set of ambiguous triples.

Set<Triple>

EdgeListGraph.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

Graph.getAmbiguousTriples()

getAmbiguousTriples.

Set<Triple>

LagGraph.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

SemGraph.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

TimeLagGraph.getAmbiguousTriples()

Retrieves the set of ambiguous triples.

Set<Triple>

Underlines.getAmbiguousTriples()

Getter for the field ambiguousTriples.

static List<Triple>

GraphUtils.getAmbiguousTriplesFromGraph(Node node, Graph graph)

Retrieves the list of ambiguous triples from the given graph for a given node.

static List<Triple>

GraphSaveLoadUtils.getCollidersFromGraph(Node node, Graph graph)

getCollidersFromGraph.

static List<Triple>

GraphUtils.getDottedUnderlinedTriplesFromGraph(Node node, Graph graph)

Retrieves the list of dotted and underlined triples from the given graph, with the specified node as the middle node.

Set<Triple>

Dag.getDottedUnderlines()

getDottedUnderlines.

Set<Triple>

EdgeListGraph.getDottedUnderlines()

getDottedUnderlines.

Set<Triple>

Graph.getDottedUnderlines()

getDottedUnderlines.

Set<Triple>

LagGraph.getDottedUnderlines()

getDottedUnderlines.

Set<Triple>

SemGraph.getDottedUnderlines()

getDottedUnderlines.

Set<Triple>

TimeLagGraph.getDottedUnderlines()

Returns a set of Triple objects representing dotted underlines.

Set<Triple>

Underlines.getDottedUnderlines()

getDottedUnderlines.

List<List<Triple>>

EdgeListGraph.getTriplesLists(Node node)

getTriplesLists.

List<List<Triple>>

TripleClassifier.getTriplesLists(Node node)

getTriplesLists.

List<List<Triple>>

Underlines.getTriplesLists(Node node)

getTriplesLists.

static List<Triple>

GraphUtils.getUnderlinedTriplesFromGraph(Node node, Graph graph)

Retrieves the underlined triples from the given graph that involve the specified node.

Set<Triple>

Dag.getUnderLines()

Retrieves the set of underlined triples.

Set<Triple>

EdgeListGraph.getUnderLines()

getUnderLines.

Set<Triple>

Graph.getUnderLines()

getUnderLines.

Set<Triple>

LagGraph.getUnderLines()

getUnderLines.

Set<Triple>

SemGraph.getUnderLines()

getUnderLines.

Set<Triple>

TimeLagGraph.getUnderLines()

Returns a set of Triple objects representing the underlines.

Set<Triple>

Underlines.getUnderLines()

getUnderLines.

static LinkedList<Triple>

GraphUtils.listColliderTriples(Graph graph)

Generates a list of triples where a node acts as a collider in a given graph.

Method parameters in edu.cmu.tetrad.graph with type arguments of type Triple

Modifier and Type

Method

Description

static void

GraphUtils.gfciR0(Graph pag, Graph cpdag, SepsetProducer sepsets, Knowledge knowledge, boolean verbose, Set<Triple> unshieldedTriples)

Applies the GFCI-R0 algorithm to orient edges in a pag based on a reference CPDAG, sepsets, and knowledge.

static Graph

GraphUtils.guaranteePag(Graph pag, FciOrient fciOrient, Knowledge knowledge, Set<Triple> unshieldedColliders, Set<Triple> extraUnshieldedColliders, boolean verbose, Set<Node> selection)

Guarantees a legal PAG by repairing deviations of a graph from a legal PAG (partial ancestral graph).

static void

GraphUtils.recallUnshieldedTriples(Graph pag, Set<Triple> unshieldedColliders, Knowledge knowledge)

Recall unshielded triples in a given graph.

static boolean

GraphUtils.removeAlmostCycles(Graph pag, Set<Triple> unshieldedColliders, Set<Triple> extraUnshieldedColliders, FciOrient fciOrient, Knowledge knowledge, boolean verbose)

Removes almost cycles from a graph.

static boolean

GraphUtils.removeCycles(Set<Triple> unshieldedColliders, FciOrient fciOrient, Graph pag, Knowledge knowledge, boolean verbose)

Removes cycles from the given graph using the Fast Causal Inference (FCI) algorithm.

void

Dag.setAmbiguousTriples(Set<Triple> triples)

Sets the ambiguous triples for the object.

void

EdgeListGraph.setAmbiguousTriples(Set<Triple> triples)

setAmbiguousTriples.

void

Graph.setAmbiguousTriples(Set<Triple> triples)

setAmbiguousTriples.

void

LagGraph.setAmbiguousTriples(Set<Triple> triples)

setAmbiguousTriples.

void

SemGraph.setAmbiguousTriples(Set<Triple> triples)

setAmbiguousTriples.

void

TimeLagGraph.setAmbiguousTriples(Set<Triple> triples)

Sets the set of ambiguous triples.

void

Underlines.setAmbiguousTriples(Set<Triple> triples)

Setter for the field ambiguousTriples.

void

Dag.setDottedUnderLineTriples(Set<Triple> triples)

Sets the dotted underline triples for the given set of Triples.

void

EdgeListGraph.setDottedUnderLineTriples(Set<Triple> triples)

setDottedUnderLineTriples.

void

Graph.setDottedUnderLineTriples(Set<Triple> triples)

setDottedUnderLineTriples.

void

LagGraph.setDottedUnderLineTriples(Set<Triple> triples)

setDottedUnderLineTriples.

void

SemGraph.setDottedUnderLineTriples(Set<Triple> triples)

setDottedUnderLineTriples.

void

TimeLagGraph.setDottedUnderLineTriples(Set<Triple> triples)

Sets the dotted underline triples.

void

Underlines.setDottedUnderLineTriples(Set<Triple> triples)

Setter for the field dottedUnderLineTriples.

void

Dag.setUnderLineTriples(Set<Triple> triples)

Sets the underlined triples.

void

EdgeListGraph.setUnderLineTriples(Set<Triple> triples)

setUnderLineTriples.

void

Graph.setUnderLineTriples(Set<Triple> triples)

setUnderLineTriples.

void

LagGraph.setUnderLineTriples(Set<Triple> triples)

setUnderLineTriples.

void

SemGraph.setUnderLineTriples(Set<Triple> triples)

setUnderLineTriples.

void

TimeLagGraph.setUnderLineTriples(Set<Triple> triples)

Sets the underline triples.

void

Underlines.setUnderLineTriples(Set<Triple> triples)

Setter for the field underLineTriples.

static String

GraphUtils.triplesToText(Set<Triple> triples, String title)

Converts a set of triples into a formatted string.
Uses of Triple in edu.cmu.tetrad.search

Methods in edu.cmu.tetrad.search that return types with arguments of type Triple

Modifier and Type

Method

Description

Set<Triple>

Cfci.getAmbiguousTriples()

Returns the ambiguous triples found in the search.

Set<Triple>

Cpc.getAmbiguousTriples()

Returns the set of ambiguous triples found during the most recent run of the algorithm.

List<Triple>

Fas.getAmbiguousTriples(Node node)

Retrieves the list of ambiguous triples involving the given node.

List<Triple>

Fasd.getAmbiguousTriples(Node node)

Retrieves a list of ambiguous triples for the given node.

List<Triple>

IFas.getAmbiguousTriples(Node node)

Returns the list of ambiguous triples found for a given node.

Set<Triple>

PcMb.getAmbiguousTriples()

Returns the set of triples identified as ambiguous by the CPC algorithm during the most recent search.

List<Triple>

SvarFas.getAmbiguousTriples(Node node)

Retrieves the list of ambiguous triples involving the given node.

Set<Triple>

Pcd.getUnshieldedColliders()

Retrieves the set of unshielded colliders in the graph returned by the method search().

Set<Triple>

Pcd.getUnshieldedNoncolliders()

Retrieves the set of unshielded noncolliders in the graph returned by the method search().
Uses of Triple in edu.cmu.tetrad.search.utils

Methods in edu.cmu.tetrad.search.utils that return types with arguments of type Triple

Modifier and Type

Method

Description

Set<Triple>

R0R4StrategyTestBased.getAllowedColliders()

The Set of Triples representing the allowed colliders for the FciOrientDataExaminationStrategy.

Set<Triple>

PcCommon.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

PcCommon.getColliderTriples()

Getter for the field colliderTriples.

Collection<Triple>

FciOrient.getInitialAllowedColliders()

Returns the initial allowed colliders based on the current strategy.

default Set<Triple>

R0R4Strategy.getInitialAllowedColliders()

Returns the allowed colliders for the current strategy.

Set<Triple>

R0R4StrategyTestBased.getInitialAllowedColliders()

Retrieves the initial set of allowed colliders.

Set<Triple>

PcCommon.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

AlmostCycleRemover.getTriple(Node y)

Returns the set of triples for the given node.

Method parameters in edu.cmu.tetrad.search.utils with type arguments of type Triple

Modifier and Type

Method

Description

void

FciOrient.orient(Graph graph, Set<Triple> unshieldedTriples)

Performs FCI orientation on the given graph, including R0 and either the Spirtes or Zhang final orientation rules.

void

FciOrient.ruleR0(Graph graph, Set<Triple> unshieldedTriples)

Orients unshielded colliders in the graph.

void

FciOrient.setAllowedColliders(Set<Triple> allowedColliders)

Sets the allowed colliders for this object.

void

R0R4Strategy.setAllowedColliders(Set<Triple> allowedColliders)

Sets the allowed colliders for the current strategy.

void

R0R4StrategyScoreBased.setAllowedColliders(Set<Triple> allowedColliders)

void

R0R4StrategyTestBased.setAllowedColliders(Set<Triple> allowedColliders)

Sets the allowed colliders for the FciOrientDataExaminationStrategy.

void

FciOrient.setInitialAllowedColliders(HashSet<Triple> initialAllowedColliders)

Sets the initial allowed colliders for the strategy.

default void

R0R4Strategy.setInitialAllowedColliders(HashSet<Triple> initialAllowedColliders)

Sets the initial allowed colliders for the current strategy.

void

R0R4StrategyTestBased.setInitialAllowedColliders(HashSet<Triple> initialAllowedColliders)

Sets the initial set of allowed colliders for the FciOrientDataExaminationStrategy.
Uses of Triple in edu.cmu.tetrad.search.work_in_progress

Methods in edu.cmu.tetrad.search.work_in_progress that return types with arguments of type Triple

Modifier and Type

Method

Description

List<Triple>

FasFdr.getAmbiguousTriples(Node node)

Returns the list of ambiguous triples found for a given node.

Set<Triple>

SampleVcpc.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

SampleVcpcFast.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

VcPc.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

VcPcAlt.getAmbiguousTriples()

Getter for the field ambiguousTriples.

Set<Triple>

VcPcFast.getAmbiguousTriples()

Getter for the field ambiguousTriples.

List<Triple>

GraphChange.getColliders()

Return colliders

Set<Triple>

SampleVcpc.getColliderTriples()

Getter for the field colliderTriples.

Set<Triple>

SampleVcpcFast.getColliderTriples()

Getter for the field colliderTriples.

Set<Triple>

VcPc.getColliderTriples()

Getter for the field colliderTriples.

Set<Triple>

VcPcAlt.getColliderTriples()

Getter for the field colliderTriples.

Set<Triple>

VcPcFast.getColliderTriples()

Getter for the field colliderTriples.

List<Triple>

GraphChange.getNoncolliders()

Return noncolliders

Set<Triple>

SampleVcpc.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

SampleVcpcFast.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

VcPc.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

VcPcAlt.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

VcPcFast.getNoncolliderTriples()

Getter for the field noncolliderTriples.

Set<Triple>

Kpc.getUnshieldedColliders()

Getter for the field unshieldedColliders.

Set<Triple>

Kpc.getUnshieldedNoncolliders()

Getter for the field unshieldedNoncolliders.

Methods in edu.cmu.tetrad.search.work_in_progress with parameters of type Triple

Modifier and Type

Method

Description

void

GraphChange.addCollider(Triple colliderTrip)

Add another collider operation to the GraphChange.

void

GraphChange.addNonCollider(Triple nonColliderTrip)

Add another non-collider operation to the GraphChange.
Uses of Triple in edu.cmu.tetrad.util

Methods in edu.cmu.tetrad.util that return Triple

Modifier and Type

Method

Description

static Triple

JsonUtils.parseJSONArrayToTetradTriple(org.json.JSONObject jObj)

parseJSONArrayToTetradTriple.

Methods in edu.cmu.tetrad.util that return types with arguments of type Triple

Modifier and Type

Method

Description

static Set<Triple>

JsonUtils.parseJSONArrayToTetradTriples(org.json.JSONArray jArray)

parseJSONArrayToTetradTriples.

Uses of Classedu.cmu.tetrad.graph.Triple

Uses of Triple in edu.cmu.tetrad.graph

Uses of Triple in edu.cmu.tetrad.search

Uses of Triple in edu.cmu.tetrad.search.utils

Uses of Triple in edu.cmu.tetrad.search.work_in_progress

Uses of Triple in edu.cmu.tetrad.util

Uses of Class
edu.cmu.tetrad.graph.Triple