Uses of Interface
edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper

Packages that use IndependenceWrapper

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.independence
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.search	Contains classes for searching for (mostly structural) causal models given data.
edu.cmu.tetrad.search.work_in_progress	Contains some classes that aren't ready for prime time.
edu.pitt.dbmi.algo.resampling
edu.pitt.dbmi.algo.resampling.task

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score)	Creates an algorithm.
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score, Graph externalGraph)	Creates an algorithm.
void	MultiDataSetAlgorithm.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Fask.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FaskConcatenated.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FaskVote.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FciIod.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Fask.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FaskConcatenated.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FaskVote.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	FciIod.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	FaskConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FaskLofsConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FaskVote.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FciIod.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	FgesConcatenated.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	Images.setIndTestWrapper(IndependenceWrapper test)	Sets the IndependenceWrapper for the algorithm.
void	ImagesBoss.setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Fask(IndependenceWrapper test, ScoreWrapper score)	Constructor for Fask.
	FaskConcatenated(ScoreWrapper score, IndependenceWrapper test)	Constructor for FaskConcatenated.
	FaskVote(IndependenceWrapper test, ScoreWrapper score)	Constructor for FaskVote.
	FciIod(IndependenceWrapper test)	Constructor for FciIod.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Cpc.getIndependenceWrapper()	Retrieves the IndependenceWrapper associated with this algorithm.
IndependenceWrapper	Cstar.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Fas.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Grasp.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Pc.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	PcMb.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Cpc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper for the algorithm.
void	Cstar.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Fas.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Grasp.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Pc.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	PcMb.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cpc(IndependenceWrapper test)	Constructor for Cpc.
	Cstar(IndependenceWrapper test, ScoreWrapper score)	Constructor for Cstar.
	Fas(IndependenceWrapper test)	Constructor for Fas.
	Grasp(IndependenceWrapper test, ScoreWrapper score)	Constructor for Grasp.
	Pc(IndependenceWrapper test)	Constructor for Pc.
	PcMb(IndependenceWrapper type)	Constructor for PcMb.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	Bfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Ccd.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Cfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Fci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	FciMax.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Gfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	GraspFci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	Rfci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	SpFci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	SvarFci.getIndependenceWrapper()	Returns the independence wrapper.
IndependenceWrapper	SvarGfci.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	Bfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Ccd.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.
void	Cfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Fci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	FciMax.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Gfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	GraspFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	Rfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	SpFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	SvarFci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	SvarGfci.setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Bfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI algorithm using the given test and score.
	Ccd(IndependenceWrapper test)	Constructs a new CCD algorithm with the given independence test.
	Cfci(IndependenceWrapper test)	Constructs a new conservative FCI algorithm with the given independence test.
	Fci(IndependenceWrapper test)	Constructor for Fci.
	FciMax(IndependenceWrapper test)	Constructor for FciMax.
	Gfci(IndependenceWrapper test, ScoreWrapper score)	Constructor for Gfci.
	GraspFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for GraspFci.
	Rfci(IndependenceWrapper test)	Constructor for Rfci.
	SpFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for SpFci.
	SvarFci(IndependenceWrapper test)	Constructor for SvarFci.
	SvarGfci(IndependenceWrapper type, ScoreWrapper score)	Constructor for SvarGfci.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.independence

Classes in edu.cmu.tetrad.algcomparison.independence that implement IndependenceWrapper

Modifier and Type	Class	Description
class	BdeuTest	Wrapper for Fisher Z test.
class	CciTest	Wrapper for Daudin Conditional Independence test.
class	ChiSquare	Wrapper for Fisher Z test.
class	ConditionalGaussianLRT	Wrapper for Fisher Z test.
class	DegenerateGaussianLRT	Wrapper for DG LRT.
class	DiscreteBicTest	Wrapper for Fisher Z test.
class	FisherZ	Wrapper for Fisher Z test.
class	GICScoreTests	Wrapper for Fisher Z test.
class	GSquare	Wrapper for Fisher Z test.
class	Kci	Wrapper for KCI test.
class	MagSemBicTest	Wrapper for Fisher Z test.
class	Mnlrlrt	Wrapper for Fisher Z test.
class	MSeparationTest	Wrapper for M-separation test.
class	MultinomialLogisticRegressionWald	Wrapper for Fisher Z test.
class	Mvplrt	Wrapper for Fisher Z test.
class	PositiveCorr	Wrapper for Fisher Z test.
class	ProbabilisticTest	Dec 17, 2018 3:44:46 PM
class	SemBicDTest	Wrapper for Fisher Z test.
class	SemBicTest	Wrapper for Fisher Z test.

Uses of IndependenceWrapper in edu.cmu.tetrad.algcomparison.utils

Methods in edu.cmu.tetrad.algcomparison.utils that return IndependenceWrapper

Modifier and Type	Method	Description
IndependenceWrapper	TakesIndependenceWrapper.getIndependenceWrapper()	Returns the independence wrapper.

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	TakesIndependenceWrapper.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper.

Uses of IndependenceWrapper in edu.cmu.tetrad.search

Constructors in edu.cmu.tetrad.search with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	Cstar(IndependenceWrapper test, ScoreWrapper score, Parameters parameters)	Constructor.

Uses of IndependenceWrapper in edu.cmu.tetrad.search.work_in_progress

Constructors in edu.cmu.tetrad.search.work_in_progress with parameters of type IndependenceWrapper

Modifier	Constructor	Description
	FaskVote(List<DataSet> dataSets, ScoreWrapper score, IndependenceWrapper test)	Constructor.

Uses of IndependenceWrapper in edu.pitt.dbmi.algo.resampling

Methods in edu.pitt.dbmi.algo.resampling with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	GeneralResamplingSearch.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence test wrapper to pass to multi-data set algorithms.

Uses of IndependenceWrapper in edu.pitt.dbmi.algo.resampling.task

Methods in edu.pitt.dbmi.algo.resampling.task with parameters of type IndependenceWrapper

Modifier and Type	Method	Description
void	GeneralResamplingSearchRunnable.setIndependenceWrapper(IndependenceWrapper independenceWrapper)	Sets the independence wrapper, for multi-data set algorithms.