Package edu.cmu.tetrad.study.gene.tetradapp.model

Class MeasurementSimulatorParams

java.lang.Object
edu.cmu.tetrad.study.gene.tetradapp.model.MeasurementSimulatorParams
All Implemented Interfaces:
TetradSerializable, Serializable
public class MeasurementSimulatorParams extends Object implements TetradSerializable
Wraps MeasurementSimulator so that it may be used as a parameter object.
Author:
josephramsey
See Also:

  • Constructor Details

    • MeasurementSimulatorParams

      public MeasurementSimulatorParams(Parameters parameters)
      Constructs a measurement simulator using the given history. The history will be used to do the simulation of each cell.
      Throws:
      NullPointerException - if the history argument is null.

  • Method Details

    • serializableInstance

      public static MeasurementSimulatorParams serializableInstance()
      Generates a simple exemplar of this class to test serialization.

    • setHistory

      public void setHistory(GeneHistory history)

    • getDishDishVariability

      public double getDishDishVariability()

    • setDishDishVariability

      public void setDishDishVariability(double value)

    • getSampleSampleVariability

      public double getSampleSampleVariability()

    • setSampleSampleVariability

      public void setSampleSampleVariability(double value)

    • getChipChipVariability

      public double getChipChipVariability()

    • setChipChipVariability

      public void setChipChipVariability(double value)

    • getPixelDigitalization

      public double getPixelDigitalization()

    • setPixelDigitalization

      public void setPixelDigitalization(double value)

    • getNumDishes

      public int getNumDishes()

    • setNumDishes

      public void setNumDishes(int value)

    • getNumCellsPerDish

      public int getNumCellsPerDish()

    • setNumCellsPerDish

      public void setNumCellsPerDish(int value)

    • getNumSamplesPerDish

      public int getNumSamplesPerDish()

    • setNumSamplesPerDish

      public void setNumSamplesPerDish(int value)

    • getStepsGenerated

      public int getStepsGenerated()

    • setStepsGenerated

      public void setStepsGenerated(int value)

    • getFirstStepStored

      public int getFirstStepStored()

    • setFirstStepStored

      public void setFirstStepStored(int value)

    • getInterval

      public int getInterval()

    • setInterval

      public void setInterval(int value)

    • isInitSync

      public boolean isInitSync()

    • setInitSync

      public void setInitSync(boolean selected)

    • isRawDataSaved

      public boolean isRawDataSaved()

    • setRawDataSaved

      public void setRawDataSaved(boolean selected)

    • isAntilogCalculated

      public boolean isAntilogCalculated()

    • setAntilogCalculated

      public void setAntilogCalculated(boolean selected)

    • getSimulator

      public MeasurementSimulator getSimulator()

    • simulate

      public void simulate(GeneHistory history)

    • getMeasuredData

      public double[][][] getMeasuredData()

    • getTimeSteps

      public int[] getTimeSteps()

    • getRawData

      public double[][][] getRawData()

    • isIncludeDishAndChipVariables

      public boolean isIncludeDishAndChipVariables()

    • setIncludeDishAndChipVariables

      public void setIncludeDishAndChipVariables(boolean includeDishAndChipVariables)