Uses of Class
edu.cmu.tetrad.util.Parameters

Packages that use Parameters

Package	Description
edu.cmu.tetrad.algcomparison
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.cluster
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.external
edu.cmu.tetrad.algcomparison.algorithm.mixed
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pattern
edu.cmu.tetrad.algcomparison.algorithm.other
edu.cmu.tetrad.algcomparison.algorithm.pairwise
edu.cmu.tetrad.algcomparison.graph
edu.cmu.tetrad.algcomparison.independence
edu.cmu.tetrad.algcomparison.score
edu.cmu.tetrad.algcomparison.simulation
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.data.simulation
edu.cmu.tetrad.gene.tetrad.gene.graph	Contains an editable display graph for (small) lag graphs.
edu.cmu.tetrad.gene.tetrad.gene.simulation	Contains classes for generating simulations of expression levels over a collection of genes.
edu.cmu.tetrad.gene.tetradapp.model
edu.cmu.tetrad.graph
edu.cmu.tetrad.search
edu.cmu.tetrad.sem
edu.cmu.tetrad.session
edu.cmu.tetrad.util
edu.pitt.dbmi.algo.resampling
edu.pitt.dbmi.algo.resampling.task

Uses of Parameters in edu.cmu.tetrad.algcomparison

Methods in edu.cmu.tetrad.algcomparison with parameters of type Parameters

Modifier and Type	Method	Description
void	Comparison.compareFromFiles(String filePath, Algorithms algorithms, Statistics statistics, Parameters parameters)
void	Comparison.compareFromFiles(String dataPath, String resultsPath, Algorithms algorithms, Statistics statistics, Parameters parameters)	Compares algorithms.
void	TimeoutComparison.compareFromFiles(String filePath, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)
void	TimeoutComparison.compareFromFiles(String dataPath, String resultsPath, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)	Compares algorithms.
void	Comparison.compareFromSimulations(String resultsPath, Simulations simulations, Algorithms algorithms, Statistics statistics, Parameters parameters)
void	Comparison.compareFromSimulations(String resultsPath, Simulations simulations, String outputFileName, Algorithms algorithms, Statistics statistics, Parameters parameters)	Compares algorithms.
void	TimeoutComparison.compareFromSimulations(String resultsPath, Simulations simulations, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)
void	TimeoutComparison.compareFromSimulations(String resultsPath, Simulations simulations, String outputFileName, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)	Compares algorithms.
void	Comparison.generateReportFromExternalAlgorithms(String dataPath, String resultsPath, Algorithms algorithms, Statistics statistics, Parameters parameters)
void	Comparison.generateReportFromExternalAlgorithms(String dataPath, String resultsPath, String outputFileName, Algorithms algorithms, Statistics statistics, Parameters parameters)
void	TimeoutComparison.generateReportFromExternalAlgorithms(String dataPath, String resultsPath, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)
void	TimeoutComparison.generateReportFromExternalAlgorithms(String dataPath, String resultsPath, String outputFileName, Algorithms algorithms, Statistics statistics, Parameters parameters, long timeout, TimeUnit unit)
void	Comparison.saveToFiles(String dataPath, Simulation simulation, Parameters parameters)	Saves simulationWrapper data.
void	TimeoutComparison.saveToFiles(String dataPath, Simulation simulation, Parameters parameters)	Saves simulationWrapper data.
void	Comparison.saveToFilesSingleSimulation(String dataPath, Simulation simulation, Parameters parameters)	Saves simulationWrapper data.

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type Parameters

Modifier and Type	Method	Description
abstract long	ExternalAlgorithm.getElapsedTime(DataModel dataSet, Parameters parameters)
Graph	Algorithm.search(DataModel dataSet, Parameters parameters)	Runs the search.
Graph	FirstInflection.search(DataModel dataSet, Parameters parameters)
Graph	MultiDataSetAlgorithm.search(List<DataModel> dataSets, Parameters parameters)	Runs the search.
Graph	StabilitySelection.search(DataModel dataSet, Parameters parameters)
Graph	StARS.search(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.cluster

Methods in edu.cmu.tetrad.algcomparison.algorithm.cluster with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Bpc.search(DataModel dataSet, Parameters parameters)
Graph	Fofc.search(DataModel dataSet, Parameters parameters)
Graph	Ftfc.search(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Ling.search(DataModel dataSet, Parameters parameters)
Graph	Lingam.search(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.external

Methods in edu.cmu.tetrad.algcomparison.algorithm.external with parameters of type Parameters

Modifier and Type	Method	Description
long	ExternalAlgorithmBnlearnMmhc.getElapsedTime(DataModel dataSet, Parameters parameters)
long	ExternalAlgorithmBNTPc.getElapsedTime(DataModel dataSet, Parameters parameters)
long	ExternalAlgorithmIntersection.getElapsedTime(DataModel dataSet, Parameters parameters)
long	ExternalAlgorithmPcalgGes.getElapsedTime(DataModel dataSet, Parameters parameters)
long	ExternalAlgorithmPcalgPc.getElapsedTime(DataModel dataSet, Parameters parameters)
long	ExternalAlgorithmTetrad.getElapsedTime(DataModel dataSet, Parameters parameters)
Graph	ExternalAlgorithmBnlearnMmhc.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file (see above) and returns it.
Graph	ExternalAlgorithmBNTPc.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file (see above) and returns it.
Graph	ExternalAlgorithmIntersection.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file (see above) and returns it.
Graph	ExternalAlgorithmPcalgGes.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file (see above) and returns it.
Graph	ExternalAlgorithmPcalgPc.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file (see above) and returns it.
Graph	ExternalAlgorithmTetrad.search(DataModel dataSet, Parameters parameters)	Reads in the relevant graph from the file and returns it.

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.mixed

Methods in edu.cmu.tetrad.algcomparison.algorithm.mixed with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Mgm.search(DataModel ds, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type Parameters

Modifier and Type	Method	Description
Graph	CcdMaxConcatenated.search(DataModel dataSet, Parameters parameters)
Graph	CcdMaxConcatenated.search(List<DataModel> dataModels, Parameters parameters)
Graph	Fask.search(DataModel dataSet, Parameters parameters)
Graph	FaskConcatenated.search(DataModel dataSet, Parameters parameters)
Graph	FaskConcatenated.search(List<DataModel> dataSets, Parameters parameters)
Graph	FaskLofsConcatenated.search(DataModel dataSet, Parameters parameters)
Graph	FaskLofsConcatenated.search(List<DataModel> dataModels, Parameters parameters)
Graph	FaskVote.search(DataModel dataSet, Parameters parameters)
Graph	FaskVote.search(List<DataModel> dataSets, Parameters parameters)
Graph	FasLofs.search(DataModel dataSet, Parameters parameters)
Graph	FgesConcatenated.search(DataModel dataSet, Parameters parameters)
Graph	FgesConcatenated.search(List<DataModel> dataModels, Parameters parameters)
Graph	Images.search(DataModel dataSet, Parameters parameters)
Graph	Images.search(List<DataModel> dataSets, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Bdce.search(DataModel dataModel, Parameters parameters)
Graph	Boss.search(DataModel dataModel, Parameters parameters)
Graph	BossMb.search(DataModel dataSet, Parameters parameters)
Graph	BossMb2.search(DataModel dataSet, Parameters parameters)
Graph	Bridges.search(DataModel dataModel, Parameters parameters)
Graph	Bridges2.search(DataModel dataModel, Parameters parameters)
Graph	Cpc.search(DataModel dataModel, Parameters parameters)
Graph	CpcStable.search(DataModel dataSet, Parameters parameters)
Graph	Fas.search(DataModel dataSet, Parameters parameters)
Graph	Fges.search(DataModel dataModel, Parameters parameters)
Graph	FgesMb.search(DataModel dataSet, Parameters parameters)
Graph	FgesMeasurement.search(DataModel dataModel, Parameters parameters)
Graph	GesMe.search(DataModel dataSet, Parameters parameters)
Graph	Grasp.search(DataModel dataModel, Parameters parameters)
Graph	GraspTol.search(DataModel dataModel, Parameters parameters)
Graph	Pc.search(DataModel dataModel, Parameters parameters)
Graph	Pcd.search(DataModel dataSet, Parameters parameters)
Graph	PcMax.search(DataModel dataModel, Parameters parameters)
Graph	PcMb.search(DataModel dataSet, Parameters parameters)
Graph	PcStable.search(DataModel dataSet, Parameters parameters)
Graph	SingleGraphAlg.search(DataModel dataSet, Parameters parameters)
Graph	Sp.search(DataModel dataModel, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Bfci.search(DataModel dataModel, Parameters parameters)
Graph	BfciTr.search(DataModel dataModel, Parameters parameters)
Graph	Ccd.search(DataModel dataSet, Parameters parameters)
Graph	CcdMax.search(DataModel dataSet, Parameters parameters)
Graph	Cfci.search(DataModel dataSet, Parameters parameters)
Graph	Fci.search(DataModel dataModel, Parameters parameters)
Graph	FciMax.search(DataModel dataModel, Parameters parameters)
Graph	Gfci.search(DataModel dataModel, Parameters parameters)
Graph	GraspFci.search(DataModel dataModel, Parameters parameters)
Graph	PagSampleRfci.search(DataModel dataSet, Parameters parameters)
Graph	Rfci.search(DataModel dataModel, Parameters parameters)
Graph	RfciBsc.search(DataModel dataSet, Parameters parameters)
Graph	SpFci.search(DataModel dataModel, Parameters parameters)
Graph	SvarFci.search(DataModel dataModel, Parameters parameters)
Graph	SvarGfci.search(DataModel dataModel, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.oracle.pattern

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pattern with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Cstar.search(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.other

Methods in edu.cmu.tetrad.algcomparison.algorithm.other with parameters of type Parameters

Modifier and Type	Method	Description
Graph	FactorAnalysis.search(DataModel ds, Parameters parameters)
Graph	Glasso.search(DataModel ds, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.algorithm.pairwise

Methods in edu.cmu.tetrad.algcomparison.algorithm.pairwise with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Eb.search(DataModel dataSet, Parameters parameters)
Graph	FaskPw.search(DataModel dataModel, Parameters parameters)
Graph	R1.search(DataModel dataSet, Parameters parameters)
Graph	R2.search(DataModel dataSet, Parameters parameters)
Graph	R3.search(DataModel dataSet, Parameters parameters)
Graph	Rskew.search(DataModel dataSet, Parameters parameters)
Graph	RskewE.search(DataModel dataSet, Parameters parameters)
Graph	Skew.search(DataModel dataSet, Parameters parameters)
Graph	SkewE.search(DataModel dataSet, Parameters parameters)
Graph	Tanh.search(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.graph

Methods in edu.cmu.tetrad.algcomparison.graph with parameters of type Parameters

Modifier and Type	Method	Description
Graph	Cyclic.createGraph(Parameters parameters)
Graph	ErdosRenyi.createGraph(Parameters parameters)
Graph	RandomForward.createGraph(Parameters parameters)
Graph	RandomGraph.createGraph(Parameters parameters)
Graph	RandomSingleFactorMim.createGraph(Parameters parameters)
Graph	RandomTwoFactorMim.createGraph(Parameters parameters)
Graph	ScaleFree.createGraph(Parameters parameters)
Graph	SingleGraph.createGraph(Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.independence

Methods in edu.cmu.tetrad.algcomparison.independence with parameters of type Parameters

Modifier and Type	Method	Description
IndependenceTest	BdeuTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	CciLingamTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	CciTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	ChiSquare.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	Codec.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	ConditionalGaussianLRT.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	DegenerateGaussianLRT.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	DiscreteBicTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	DSeparationTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	FisherZ.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	Gsquare.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	IndependenceWrapper.getTest(DataModel dataSet, Parameters parameters)	Returns true iff x and y are independent conditional on z for the given data set.
IndependenceTest	Kci.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	KimEtAlScoreTests.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	MagSemBicTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	Mnlrlrt.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	MultinomialLogisticRegressionWald.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	Mvplrt.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	PositiveCorr.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	ProbabilisticTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	SemBicDTest.getTest(DataModel dataSet, Parameters parameters)
IndependenceTest	SemBicTest.getTest(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.score

Methods in edu.cmu.tetrad.algcomparison.score with parameters of type Parameters

Modifier and Type	Method	Description
Score	BdeuScore.getScore(DataModel dataSet, Parameters parameters)
Score	CciScore.getScore(DataModel dataSet, Parameters parameters)
Score	ConditionalGaussianBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	ConditionalGaussianOtherBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	DegenerateGaussianBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	DiscreteBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	DiscreteMixedBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	DSeparationScore.getScore(DataModel dataSet, Parameters parameters)
Score	EbicScore.getScore(DataModel dataSet, Parameters parameters)
Score	FisherZScore.getScore(DataModel dataSet, Parameters parameters)
Score	KimEtAlScores.getScore(DataModel dataSet, Parameters parameters)
Score	MagSemBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	MNLRBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	MVPBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	PoissonPriorScore.getScore(DataModel dataSet, Parameters parameters)
Score	PositiveCorrScore.getScore(DataModel dataSet, Parameters parameters)
Score	ScoreWrapper.getScore(DataModel dataSet, Parameters parameters)	Returns true iff x and y are independent conditional on z for the given data set.
Score	SemBicScore.getScore(DataModel dataSet, Parameters parameters)
Score	SemBicScoreDeterministic.getScore(DataModel dataSet, Parameters parameters)
Score	ZhangShenBoundScore.getScore(DataModel dataSet, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.algcomparison.simulation

Methods in edu.cmu.tetrad.algcomparison.simulation with parameters of type Parameters

Modifier and Type	Method	Description
void	BayesNetSimulation.createData(Parameters parameters, boolean newModel)
void	BooleanGlassSimulation.createData(Parameters parameters, boolean newModel)
void	ConditionalGaussianSimulation.createData(Parameters parameters, boolean newModel)
void	GeneralSemSimulation.createData(Parameters parameters, boolean newModel)
void	GeneralSemSimulationSpecial1.createData(Parameters parameters, boolean newModel)
void	LeeHastieSimulation.createData(Parameters parameters, boolean newModel)
void	LinearFisherModel.createData(Parameters parameters, boolean newModel)
void	LinearSineSimulation.createData(Parameters parameters, boolean newModel)
void	SemSimulation.createData(Parameters parameters, boolean newModel)
void	SemThenDiscretize.createData(Parameters parameters, boolean newModel)
void	Simulation.createData(Parameters parameters, boolean newModel)	Creates a data set and simulates data.
void	StandardizedSemSimulation.createData(Parameters parameters, boolean newModel)
void	TimeSeriesSemSimulation.createData(Parameters parameters, boolean newModel)

Uses of Parameters in edu.cmu.tetrad.algcomparison.utils

Methods in edu.cmu.tetrad.algcomparison.utils that return Parameters

Modifier and Type	Method	Description
Parameters	HasParameterValues.getParameterValues()

Uses of Parameters in edu.cmu.tetrad.data.simulation

Methods in edu.cmu.tetrad.data.simulation that return Parameters

Modifier and Type	Method	Description
Parameters	LoadContinuousDataAndSingleGraph.getParameterValues()
Parameters	LoadContinuousDataSmithSim.getParameterValues()

Methods in edu.cmu.tetrad.data.simulation with parameters of type Parameters

Modifier and Type	Method	Description
void	LoadContinuousDataAndGraphs.createData(Parameters parameters, boolean newModel)
void	LoadContinuousDataAndSingleGraph.createData(Parameters parameters, boolean newModel)
void	LoadContinuousDataSmithSim.createData(Parameters parameters, boolean newModel)
void	LoadDataAndGraphs.createData(Parameters parameters, boolean newModel)
void	LoadDataFromFileWithoutGraph.createData(Parameters parameters, boolean newModel)

Uses of Parameters in edu.cmu.tetrad.gene.tetrad.gene.graph

Constructors in edu.cmu.tetrad.gene.tetrad.gene.graph with parameters of type Parameters

Modifier	Constructor	Description
	LagGraphParams(Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.gene.tetrad.gene.simulation

Constructors in edu.cmu.tetrad.gene.tetrad.gene.simulation with parameters of type Parameters

Modifier	Constructor	Description
	MeasurementSimulator(Parameters parameters)	Constructs a measurement simulator using the given history.

Uses of Parameters in edu.cmu.tetrad.gene.tetradapp.model

Constructors in edu.cmu.tetrad.gene.tetradapp.model with parameters of type Parameters

Modifier	Constructor	Description
	BooleanGlassGeneIm(BooleanGlassGenePm genePm, Parameters parameters)	Obtains a boolean Glass function from the boolean Glass gene PM provided and uses it to create a Glass history and a measurement simulator.
	MeasurementSimulatorParams(Parameters parameters)	Constructs a measurement simulator using the given history.

Uses of Parameters in edu.cmu.tetrad.graph

Methods in edu.cmu.tetrad.graph with parameters of type Parameters

Modifier and Type	Method	Description
static Graph	GraphUtils.getComparisonGraph(Graph graph, Parameters params)

Uses of Parameters in edu.cmu.tetrad.search

Methods in edu.cmu.tetrad.search with parameters of type Parameters

Modifier and Type	Method	Description
Graph	FaskVote.search(Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.sem

Methods in edu.cmu.tetrad.sem that return Parameters

Modifier and Type	Method	Description
Parameters	SemIm.getParams()

Methods in edu.cmu.tetrad.sem with parameters of type Parameters

Modifier and Type	Method	Description
void	SemIm.setParams(Parameters params)

Constructors in edu.cmu.tetrad.sem with parameters of type Parameters

Modifier	Constructor	Description
	SemIm(SemPm semPm, SemIm oldSemIm, Parameters parameters)	Constructs a new SEM IM from the given SEM PM, using the old SEM IM and params object to guide the choice of parameter values.
	SemIm(SemPm semPm, Parameters params)	Constructs a new SEM IM from the given SEM PM, using the given params object to guide the choice of parameter values.
	StandardizedSemIm(SemIm im, StandardizedSemIm.Initialization initialization, Parameters parameters)	Constructs a new standardized SEM IM from the freeParameters in the given SEM IM.
	StandardizedSemIm(SemIm im, Parameters parameters)	Constructs a new standardized SEM IM, initializing from the freeParameters in the given SEM IM.

Uses of Parameters in edu.cmu.tetrad.session

Methods in edu.cmu.tetrad.session that return Parameters

Modifier and Type	Method	Description
Parameters	SessionNode.getParam(Class modelClass)	Gets the parameter object for the givem model class.
Parameters	SessionNode.getParameters()

Methods in edu.cmu.tetrad.session with parameters of type Parameters

Modifier and Type	Method	Description
void	SessionNode.putParam(Class modelClass, Parameters param)	Sets the parameter object for the given model class to the given object.

Constructors in edu.cmu.tetrad.session with parameters of type Parameters

Modifier	Constructor	Description
	Type1(Type2 model1, Type3 model2, Parameters parameters)	A sample constructor that takes Model 2 and Type3 as parent.
	Type10(Type6 model1, Type6 model2, Parameters parameters)
	Type11(Parameters parameters)
	Type12(Type11 a, Parameters parameters)
	Type12(Type12 a, Parameters parameters)
	Type2(Parameters parameters)	A sample constructor that takes Model 2 and Type3 as parent.
	Type3(Type2 model1, Parameters parameters)	It should be possible to construct a Type3-model with a Type1-node as parent.
	Type4(Type1 model1, Parameters parameters)	It should be possible to construct a Type4-model with a Type1-node as parent.
	Type5(Type1 model1, Type1 model2, Parameters parameters)	It should not be possible to constuct Type5, because it contains two arguments of the same type.
	Type6(Type7 model1, Type8 model2, Parameters parameters)
	Type7(Parameters parameters)
	Type8(Type7 model1, Type9 model2, Parameters parameters)
	Type8(Type7 model1, Parameters parameters)
	Type9(Type6 model1, Parameters parameters)
	Type9(Type7 model1, Type8 model2, Parameters parameters)

Uses of Parameters in edu.cmu.tetrad.util

Methods in edu.cmu.tetrad.util that return Parameters

Modifier and Type	Method	Description
static Parameters	ParameterUtils.create(List<String> names)	Create parameters with their default values.
static Parameters	Parameters.serializableInstance()

Methods in edu.cmu.tetrad.util with parameters of type Parameters

Modifier and Type	Method	Description
void	Parameters.putAll(Parameters parameters)

Constructors in edu.cmu.tetrad.util with parameters of type Parameters

Modifier	Constructor	Description
	Parameters(Parameters parameters)

Uses of Parameters in edu.pitt.dbmi.algo.resampling

Methods in edu.pitt.dbmi.algo.resampling with parameters of type Parameters

Modifier and Type	Method	Description
void	GeneralResamplingSearch.setParameters(Parameters parameters)
void	GeneralResamplingTest.setParameters(Parameters parameters)

Uses of Parameters in edu.pitt.dbmi.algo.resampling.task

Constructors in edu.pitt.dbmi.algo.resampling.task with parameters of type Parameters

Modifier	Constructor	Description
	GeneralResamplingSearchRunnable(DataModel dataModel, Algorithm algorithm, Parameters parameters, GeneralResamplingSearch resamplingAlgorithmSearch, boolean verbose)
	GeneralResamplingSearchRunnable(List<DataModel> dataModel, MultiDataSetAlgorithm algorithm, Parameters parameters, GeneralResamplingSearch resamplingAlgorithmSearch, boolean verbose)