Uses of Package
edu.cmu.tetrad.util
Packages that use edu.cmu.tetrad.util
Package
Description
This package contains classes for causal graph search algorithms.
This package contains classes for scoring causal graph models.
This package contains classes for testing causal graph search algorithms.
This package contains utility classes for causal graph search algorithms.
A package for algorithms that are not ready for prime time.
Contains an editable display graph for (small) lag graphs.
Implements a time-series simulation engine suitable for time-series gene
expression
studies.
Contains classes for generating simulations of expression levels over a
collection
of genes.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparisonClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithmClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.continuous.dagClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.multiClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdagClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.oracle.pagClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.otherClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.algorithm.pairwiseClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.graphClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.independenceClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.scoreClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.simulationClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.statisticClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.sweep
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.algcomparison.utilsClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.bayesClassDescriptionTagging interface for instantiated models.Tagging interface for parametric models.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.Vector wrapping matrix library.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.calculator.expressionClassDescriptionInterface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.classifyClassDescriptionInterface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.cluster
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.cluster.metrics
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.dataClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.Vector wrapping matrix library.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.data.audit
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.data.missingClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.data.simulationClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.estimate.v1ClassDescriptionInterface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.graphClassDescriptionStores a list of named parameters with their values.Stores a (x, y) point without having to use awt classes.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.Interface to tag a class that should be exluded from the set of TetradSerializable classes, even if it implements the TetradSerializable interface.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.hybridcgClassDescriptionStores a list of named parameters with their values.Tagging interface for parametric models.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.regressionClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.Stores a 2D array of Strings for printing out tables.Vector wrapping matrix library.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.searchClassDescriptionInterface for classes that can set and retrieve the effective sample size.Wraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Rank tests for cross-covariance matrices pooled across the strata of a discrete domain (or batch, site, cohort) variable, after Theorem 4 of Dong, Dai, Ng, Spirtes, and Zhang, "Identifying Partially Observed Causal Models from Heterogeneous/Nonstationary Data" (ICML 2026), the Phase 1 test of their LCD-NOD framework.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.blocksClassDescriptionInterface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.harness
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.harness.tsc
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.mimic
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.scoreClassDescriptionInterface for classes that can set and retrieve the effective sample size.Wraps the EJML linear algebra library for most uses in Tetrad.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.testClassDescriptionInterface for classes that can set and retrieve the effective sample size.Wraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Rank tests for cross-covariance matrices pooled across the strata of a discrete domain (or batch, site, cohort) variable, after Theorem 4 of Dong, Dai, Ng, Spirtes, and Zhang, "Identifying Partially Observed Causal Models from Heterogeneous/Nonstationary Data" (ICML 2026), the Phase 1 test of their LCD-NOD framework.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.utilsClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.search.work_in_progressClassDescriptionWraps the EJML linear algebra library for most uses in Tetrad.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.semClassDescriptionTagging interface for instantiated models.Wraps the EJML linear algebra library for most uses in Tetrad.Stores a list of named parameters with their values.Tagging interface for parametric models.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.Vector wrapping matrix library.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.graphClassDescriptionStores a list of named parameters with their values.Stores a (x, y) point without having to use awt classes.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.historyClassDescriptionStores a (x, y) point without having to use awt classes.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetrad.gene.simulationClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.gene.tetradapp.modelClassDescriptionStores a list of named parameters with their values.Interface to tag a class that is part of the set of serializable classes in the Tetrad API.
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.study.performance
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Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.utilClassDescriptionAlgorithm descriptions.Result of batchBivariateAllPairs(): provides indexed lookup so callers don't have to track which result corresponds to which pair.Represents the result of a conditional density estimation in a one-dimensional space.Represents the result of a 2D conditional density estimation.Logger configuration.A default implementation of the event.Encapsulates the results of an estimation process, including average row correlation, effective sample size (ESS), and the number of rows used in the computation.Interface for a single-argument, double-valued function that can be passed to mathematical routines.May 14, 2019 11:25:02 AMSets up streams for logging via the Java logging API.Wraps the EJML linear algebra library for most uses in Tetrad.An enum for the type of time.Allows a view of a matrix to be created that is a subset of the original matrix, to allow parts of a matrix to be set using indices in the view.Represents a natural key for a possibly-lagged node name of the form
"name"or"name:lag".Represents a natural key, which consists of a string prefix and an optional numeric suffix.Provides an application-wide "memory" of the number format to be used.A thread-safe, identity-preserving cache that converts DAGs or MAGs to PAGs.Describes a parameter.Stores descriptions of the parameters for the simulation box.Stores a list of named parameters with their values.Frequency function of partial correlation r(12|34...k), assuming that the true partial correlation is equal to zero.Implements an n-dimensional point.Stores a (x, y) point without having to use awt classes.Provides a common random number generator to be used throughout Tetrad, to avoid problems that happen when random number generators are created more often than once per millisecond.Represents an entry in the RCCA (Regularized Canonical Correlation Analysis) data structure.Represents the result of an average pairwise row correlation estimation, containing the adjusted average row correlation value, the effective sample size, and the number of row pairs used in the computation.May 14, 2019 11:23:54 AMRank tests for cross-covariance matrices pooled across the strata of a discrete domain (or batch, site, cohort) variable, after Theorem 4 of Dong, Dai, Ng, Spirtes, and Zhang, "Identifying Partially Observed Causal Models from Heterogeneous/Nonstationary Data" (ICML 2026), the Phase 1 test of their LCD-NOD framework.This cancels all processes that check the TaskManager.getInstance().isCanceled() method.Represents a Taylor series expansion for a mathematical function.Represents a logging utility used throughout tetrad.Represents an empty configuration for the logger.Represents the configuration for the logger.Represents an event which is just an id and a description.An event associated with theTetradLoggerListener.A listener for tetrad's logger.Nov 10, 2017 4:14:31 PMInterface to tag a class that is part of the set of serializable classes in the Tetrad API.An enum of delimiters.Enumerates the available implementation strategies for mathematical computations.Vector wrapping matrix library.Represents the getModel Tetrad version. -
Classes in edu.cmu.tetrad.util used by edu.cmu.tetrad.util.distClassDescriptionInterface to tag a class that is part of the set of serializable classes in the Tetrad API.