Constant Field Values
edu.cmu.*
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edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag.CdnodBoss
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edu.cmu.tetrad.algcomparison.algorithm.other.PythonGin
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edu.cmu.tetrad.algcomparison.graph.GraphTypesModifier and TypeConstant FieldValue
public static final String"Cyclic (Constructed From Small Loops)"public static final String"Erdos-Renyi DAG (Fixed Edge Probability)"public static final String"Random Foward DAG (Fixed Average Degree)"public static final String"Random MIM"public static final String"Random MIMIC"public static final String"Random One Factor MIM"public static final String"Random Two Factor MIM"public static final String"Scale Free DAG (Bollobas et al.)" -
edu.cmu.tetrad.algcomparison.graph.RandomGraph
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edu.cmu.tetrad.algcomparison.independence.BlockIndependenceWrapper
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edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper
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edu.cmu.tetrad.algcomparison.score.BlockScoreWrapper
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edu.cmu.tetrad.algcomparison.score.ScoreWrapper
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edu.cmu.tetrad.algcomparison.simulation.Simulation
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edu.cmu.tetrad.algcomparison.simulation.SimulationTypesModifier and TypeConstant FieldValue
public static final String"Additive Noise SEM (Deep Net)"public static final String"Bayes Net (Multinomial)"public static final String"Boolean Glass Simulation"public static final String"Mixed Conditional Gaussian"public static final String"DAO Simulation"public static final String"Designed Experiment"public static final String"Gaussian Process Structural Equation Model"public static final String"General Additive Model (GAM)"public static final String"General Noise SEM (Deep Net)"public static final String"General Structural Equation Model"public static final String"Mixed Lee & Hastie"public static final String"LG MNAR Simulation"public static final String"Linear Gaussian SEM"public static final String"Linear Non-Gaussian SEM"public static final String"Loaded From Files"public static final String"Observational Study"public static final String"Standardized Structural Equation Model"public static final String"Linear Structural Equation Model"public static final String"Time Series"public static final String"Trained DAG Simulation"
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edu.cmu.tetrad.algcomparison.statistic.Statistic
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edu.cmu.tetrad.bayes.ManipulatingBayesUpdater
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edu.cmu.tetrad.bayes.MlBayesIm
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edu.cmu.tetrad.calculator.expression.Expression
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edu.cmu.tetrad.calculator.expression.ExpressionDescriptor
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edu.cmu.tetrad.calculator.expression.ExpressionSignature
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edu.cmu.tetrad.data.ContinuousDiscretizationSpecModifier and TypeConstant FieldValue
public static final int2public static final int1public static final int3 -
edu.cmu.tetrad.data.Covariances
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edu.cmu.tetrad.data.DataBox
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edu.cmu.tetrad.data.DataModel
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edu.cmu.tetrad.data.DataSet
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edu.cmu.tetrad.data.DiscreteVariable
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edu.cmu.tetrad.data.KnowledgeGroup
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edu.cmu.tetrad.data.KnowledgeTransferable
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edu.cmu.tetrad.data.Simulator
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edu.cmu.tetrad.data.Variable
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edu.cmu.tetrad.data.audit.DataAuditModifier and TypeConstant FieldValue
public static final double0.99public static final int5public static final String"Non-Gaussianity was flagged for at least one continuous variable. The Anderson-Darling check is marginal, and a non-Gaussian marginal is consistent both with a non-Gaussian error term in a linear additive model (the case LiNGAM-family methods exploit) and with a nonlinear or non-additive dependence on parents with Gaussian errors, which violates the functional form those methods assume. The nonlinearity checks tool (Tools > Nonlinearity Checks... in the Tetrad GUI) tests the conditional mean E(Y|X) directly and reports whether the effects of several parents combine additively, which distinguishes these cases; note that its verdicts are direction-relative, so both regression directions are informative."public static final String"A repeated point mass at the extreme of a variable\'s range was flagged (SENTINEL_VALUE). Whether such a value is a missing-data code or a real measurement cannot be settled from the numbers alone; the codebook or data dictionary for the file settles it. If it is a code, the cells holding it are missing entries that the file does not mark as missing, so the missingness audit understates the missing rate and the pattern of codes across variables is a missingness pattern: recoding them to missing and rerunning the audit reports both. The Data Audit dialog offers that recode per flagged variable. Note that the audit\'s other continuous checks - correlations, near-determinism, non-Gaussianity, serial dependence - were computed with the flagged value treated as data, so their verdicts for the affected columns should be read after the recode, not before."public static final String"Serial dependence in file order was flagged with no serial grouping variable configured. This signature has two distinct causes: genuine serial structure (a time series or spatial sequence), or a file sorted by block (rows grouped by subject, configuration, or condition), where within-block homogeneity masquerades as autocorrelation. If a discrete variable identifies the blocks, recomputing the audit with it as the serial grouping variable separates the two: under the block reading the within-group autocorrelations collapse and block-constant variables are skipped, while under the serial reading the dependence survives grouping."
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edu.cmu.tetrad.data.missing.MissingDataAuditModifier and TypeConstant FieldValue
public static final double0.2public static final double0.05public static final int30
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edu.cmu.tetrad.graph.Graph
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edu.cmu.tetrad.graph.Node
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edu.cmu.tetrad.graph.RandomGraph.UniformGraphGeneratorModifier and TypeConstant FieldValue
public static final int0public static final int1
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edu.cmu.tetrad.hybridcg.HybridCgIo
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edu.cmu.tetrad.search.MarkovAuditUtils
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edu.cmu.tetrad.search.ModelObserver
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edu.cmu.tetrad.search.PcAR
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edu.cmu.tetrad.search.harness.tsc.SemParameterizerModifier and TypeConstant FieldValue
public static final double1.2public static final double0.2public static final double3.0public static final double1.0
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edu.cmu.tetrad.search.utils.CorrectnessGates
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edu.cmu.tetrad.search.utils.Embedding
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edu.cmu.tetrad.sem.ISemIm
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edu.cmu.tetrad.sem.ResidualCovariance
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edu.cmu.tetrad.sem.RicfEjmlModifier and TypeConstant FieldValue
public static final int1000public static final double1.0E-8 -
edu.cmu.tetrad.sem.SemEstimator
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edu.cmu.tetrad.sem.SemOptimizer
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edu.cmu.tetrad.study.gene.tetrad.gene.algorithm.util.BasicMatrixModifier and TypeConstant FieldValue
public static final float3.4028234663852886E38fpublic static final int2147483647public static final short32767public static final float-3.4028234663852886E38fpublic static final int-2147483648public static final short-32768
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edu.cmu.tetrad.study.gene.tetrad.gene.graph.LagGraphParams
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edu.cmu.tetrad.study.gene.tetrad.gene.history.GraphRandomizer
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edu.cmu.tetrad.study.gene.tetrad.gene.history.Initializer
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edu.cmu.tetrad.study.gene.tetrad.gene.history.RandomDistribution
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edu.cmu.tetrad.study.gene.tetrad.gene.history.SimpleRandomizer
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edu.cmu.tetrad.util.Im
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edu.cmu.tetrad.util.ParamsModifier and TypeConstant FieldValue
public static final String"adaptiveBasisSelection"public static final String"addOriginalDataset"public static final String"allowBidirected"public static final String"allowInternalRandomness"public static final String"alpha"public static final String"alphaDefault0.05"public static final String"amBetaAlpha"public static final String"amBetaBeta"public static final String"amCoefHigh"public static final String"amCoefLow"public static final String"amCoefSymmetric"public static final String"amDerivativeMax"public static final String"amDerivativeMin"public static final String"amDistortionType"public static final String"amEnsureInvertibility"public static final String"amFirstDerivMax"public static final String"amFirstDerivMin"public static final String"amRescaleMax"public static final String"amRescaleMin"public static final String"amTaylorSeriesDegree"public static final String"anmNoiseKind"public static final String"anmNoiseStrength"public static final String"anmNonlinearity"public static final String"anmPreset"public static final String"applyR1"public static final String"avgDegree"public static final String"basisRankTransform"public static final String"basisScale"public static final String"basisType"public static final String"betaHigh"public static final String"betaLow"public static final String"bgeAlphaMu"public static final String"bgeAlphaWOffset"public static final String"binsPerContXY"public static final String"binsPerContZ"public static final String"bootstrappingNumThreads"public static final String"bossAlg"public static final String"bwMaxRows"public static final String"cacheScores"public static final String"catRho"public static final String"cciScoreAlpha"public static final String"cdnodColliderStyle"public static final String"cdnodContextMargin"public static final String"cdnodExcludeContextsFromS"public static final String"cdnodGreedyContexts"public static final String"cdnodMaxContextsPerNode"public static final String"cdnodMaxPMargin"public static final String"cdnodScoreContexts"public static final String"cellTableType"public static final String"cgExact"public static final String"checkAdjacencySepsets"public static final String"checkType"public static final String"clusterSizes"public static final String"coefHigh"public static final String"coefLow"public static final String"coefSymmetric"public static final String"colliderDiscoveryRule"public static final String"colliderOrientationStyle"public static final String"compareGraphAlgcomp"public static final String"completeRuleSetUsed"public static final String"concurrentFAS"public static final String"conditioningThreshold"public static final String"conflictRule"public static final String"connected"public static final String"convergenceThreshold"public static final String"cordEngine"public static final String"cordLearningRate"public static final String"cordMaxLeafNodes"public static final String"cordNumEstimators"public static final String"cordNumThresholds"public static final String"cordSeed"public static final String"cordSymmetric"public static final String"covHigh"public static final String"covLow"public static final String"covSymmetric"public static final String"cpdag"public static final String"cstarCpdagAlgorithm"public static final String"customNoiseExpression"public static final String"customNoiseOption"public static final String"cutoffConstrainSearch"public static final String"cutoffDataSearch"public static final String"cutoffIndTest"public static final String"cyclicCoefHigh"public static final String"cyclicCoefLow"public static final String"cyclicCoefStyle"public static final String"cyclicMaxProd"public static final String"cyclicRadius"public static final String"daoErrorDistribution"public static final String"daoRandomizeOrder"public static final String"daoSfIn"public static final String"daoSfOut"public static final String"dataType"public static final String"deCoupling"public static final String"deDerivedNoise"public static final String"deEmitConfigColumn"public static final String"deInteraction"public static final String"deMaxLevels"public static final String"deMinLevels"public static final String"deNumDerived"public static final String"deNumFactors"public static final String"deNumResponses"public static final String"deResponseNoise"public static final String"deSelection"public static final String"deSortByConfiguration"public static final String"dedupByCpdag"public static final String"depth"public static final String"determinismThreshold"public static final String"differentGraphs"public static final String"discreteInteractionOrder"public static final String"discretize"public static final String"distortPostNonlinear"public static final String"distortPreNoise"public static final String"doColliderOrientation"public static final String"doHigherRankExpansion"public static final String"doLegalityGating"public static final String"doOneEquationOnly"public static final String"doPossibleDsep"public static final String"domainColumn"public static final String"ebicGamma"public static final String"effectiveSampleSize"public static final String"equivalenceMargin"public static final String"equivalenceMarginMultiplier"public static final String"errorsNormal"public static final String"excludeSelectionBias"public static final String"extraEdgeRemovalStep"public static final String"fDegree"public static final String"fa_threshold"public static final String"faithfulnessAssumed"public static final String"fasRule"public static final String"faskAdjacencyMethod"public static final String"faskDelta"public static final String"faskLeftRightRule"public static final String"faskNonempirical"public static final String"faskOverrideBlockLength"public static final String"faskOverrideBootstraps"public static final String"faskPoolAdjacency"public static final String"faskPoolAdjacencyOrientations"public static final String"faskPoolExternalAdjacencyFraction"public static final String"faskPoolExternalOrientations"public static final String"fastIcaA"public static final String"fastIcaMaxIter"public static final String"fastIcaTolerance"public static final String"fcitCorrectness"public static final String"fcitStartsWith"public static final String"fcitSlAllowClassEscape"public static final String"fdrQ"public static final String"ffmlFfFeatures"public static final String"ffmlInteractionLambda"public static final String"ffmlRidge"public static final String"fileOutPath"public static final String"fisherEpsilon"public static final String"flopNumRestarts"public static final String"fofcAlpha"public static final String"gammaHigh"public static final String"gammaLow"public static final String"gcmControlFunction"public static final String"gcmMultiplierSamples"public static final String"gcmRegressorType"public static final String"gcmRffFeatures"public static final String"gcmRffSigma"public static final String"gcmRidge"public static final String"gcmZTruncationLimit"public static final String"generalSemErrorTemplate"public static final String"generalSemFunctionTemplateLatent"public static final String"generalSemFunctionTemplateMeasured"public static final String"generalSemParameterTemplate"public static final String"ginBackend"public static final String"ginPermutations"public static final String"ginRidge"public static final String"gmasAllowAdditions"public static final String"gmasLookaheadDepth"public static final String"gmasTriangleEscapeOnly"public static final String"graspAlg"public static final String"graspBreakAFterImprovement"public static final String"graspCheckCovering"public static final String"graspDepth"public static final String"graspForwardTuckOnly"public static final String"graspNonSingularDepth"public static final String"graspOrderedAlg"public static final String"graspSingularDepth"public static final String"graspToleranceDepth"public static final String"graspUseRaskuttiUhler"public static final String"graspUseScore"public static final String"graspUseVpScoring"public static final String"guaranteeAcyclic"public static final String"guaranteeCpdag"public static final String"guaranteeIid"public static final String"guaranteePag"public static final String"hiddenDimension"public static final String"hiddenDimensions"public static final String"ia"public static final String"imagesMetaAlg"public static final String"imapAlpha"public static final String"includeAllNodes"public static final String"includeNegativeCoefs"public static final String"includeNegativeSkewsForBeta"public static final String"includePositiveCoefs"public static final String"includePositiveSkewsForBeta"public static final String"include_structure_model"public static final String"inputScale"public static final String"instanceRow"public static final String"instanceSpecificAlpha"public static final String"interceptHigh"public static final String"interceptLow"public static final String"intervalBetweenRecordings"public static final String"intervalBetweenShocks"public static final String"ionAdjacencySearch"public static final String"ionPathLengthSearch"public static final String"ipen"public static final String"is"public static final String"itr"public static final String"kciAlpha"public static final String"kciCutoff"public static final String"kciEpsilon"public static final String"kciNumBootstraps"public static final String"kciUseApproximation"public static final String"kernelRegressionSampleSize"public static final String"kernelType"public static final String"kernelWidth"public static final String"kmlBandwidthMultiplier"public static final String"kmlFeatureType"public static final String"kmlJitter"public static final String"kmlLambda"public static final String"kmlNumFeatures"public static final String"lambda1"public static final String"latentGroupSpecs"public static final String"latentMeasuredImpureParents"public static final String"linearHigh"public static final String"linearLow"public static final String"lingamPruneAlpha"public static final String"lingamRefitAndPrune"public static final String"logFinalOrientations"public static final String"lowerBound"public static final String"lvHeuristicOnly"public static final String"maxBlockingPathLength"public static final String"maxCategories"public static final String"maxCellsPerStratum"public static final String"maxDegree"public static final String"maxDiscriminatingPathLength"public static final String"maxDistinctValuesDiscrete"public static final String"maxIndegree"public static final String"maxIterations"public static final String"maxLatentSubsetSize"public static final String"maxObservedLevelsPerVar"public static final String"maxOutdegree"public static final String"maxPaxPOrientationHeuristicMaxLength"public static final String"maxPossibleSepPathLength"public static final String"maxRank"public static final String"maxRuns"public static final String"maxScoreDrop"public static final String"maxit"public static final String"mb"public static final String"meanHigh"public static final String"meanLow"public static final String"measuredMeasuredImpureAssociations"public static final String"measuredMeasuredImpureParents"public static final String"measurementModelDegree"public static final String"measurementVariance"public static final String"dmMergeThreshold"public static final String"mimMetaEdgeConnectionType"public static final String"mgmParam1"public static final String"mgmParam2"public static final String"mgmParam3"public static final String"mimLatentGroupSpecs"public static final String"mimLatentMeasuredImpureParents"public static final String"mimMeasuredMeasuredImpureAssociations"public static final String"mimMeasuredMeasuredImpureParents"public static final String"mimNumChildrenPerGroup"public static final String"mimbuildType"public static final String"mimicGroupSpecs"public static final String"mimicNumSharedParents"public static final String"minCategories"public static final String"minCountPerCell"public static final String"minParamSampleSize"public static final String"minSampleSizePerCell"public static final String"minStratumSize"public static final String"minimaxFfFeatures"public static final String"minimaxFfSigma"public static final String"minimaxIrlsIters"public static final String"minimaxMaxNu"public static final String"minimaxPermutations"public static final String"minimaxRidge"public static final String"minimaxScale"public static final String"missingDataPolicy"public static final String"missingEmMaxIterations"public static final String"missingEmRidge"public static final String"missingEmTolerance"public static final String"missingEssMode"public static final String"missingNumImputations"public static final String"missingTestwiseCommonRows"public static final String"mnarNumExtraInfluences"public static final String"mnarNumVariablesWithMissing"public static final String"mnarThreshold"public static final String"noRandomlyDeterminedIndependence"public static final String"noiseExpression"public static final String"numBasisFunctions"public static final String"numBscBootstrapSamples"public static final String"numCategories"public static final String"numCategoriesToDiscretize"public static final String"numFactors"public static final String"numFfFeatures"public static final String"numLags"public static final String"numLatents"public static final String"numMeasures"public static final String"numRandomizedSearchModels"public static final String"numRounds"public static final String"numRuns"public static final String"numStarts"public static final String"mimNumStructuralEdges"public static final String"mimNumStructuralNodes"public static final String"numSubsamples"public static final String"numThreads"public static final String"numberOfExpansions"public static final String"numberResampling"public static final String"optimalAcrossBranches"public static final String"orientAndPrune"public static final String"orientTowardDConnections"public static final String"orientVisibleFeedbackLoops"public static final String"orientationAlpha"public static final String"osDegradeCensorProp"public static final String"osDegradeCensorQuantile"public static final String"osDegradeMissingMechanism"public static final String"osDegradeMissingProp"public static final String"osDegradeOrdinalizeProp"public static final String"osFormIndexNoise"public static final String"osFormInteraction"public static final String"osFormNonlinearity"public static final String"osGraphAvgSystemDegree"public static final String"osGraphEdgeDensity"public static final String"osGraphNumContext"public static final String"osGraphNumHiddenContext"public static final String"osGraphNumIndices"public static final String"osGraphNumOutcomes"public static final String"osGraphNumSystem"public static final String"osPanelEmitSubjectColumn"public static final String"osPanelEmitSubjectsAsDataSets"public static final String"osPanelNumSubjects"public static final String"osPanelSubjectShiftSd"public static final String"osSerialArCoef"public static final String"osSerialIndexMemoryHigh"public static final String"osSerialIndexMemoryLow"public static final String"osSerialMaxLag"public static final String"osSerialPropCrossLag"public static final String"osTypeDiscreteOutcome"public static final String"osTypeNumCategories"public static final String"osTypePropContextDiscrete"public static final String"osTypePropSystemDiscrete"public static final String"outputCpdag"public static final String"outputRBD"public static final String"parallelized"public static final String"pcOrderRefinement"public static final String"pcRefinementAlpha"public static final String"penaltyDiscount"public static final String"penaltyDiscountDefault1"public static final String"penaltyDiscountZs"public static final String"percentDiscrete"public static final String"percentResampleSize"public static final String"percentStability"public static final String"percentSubsampleSize"public static final String"poissonLambda"public static final String"polynomialConstant"public static final String"polynomialDegree"public static final String"poolDataSets"public static final String"poolImputations"public static final String"pooledTestMethod"public static final String"precomputeCovariances"public static final String"preserveMarkov"public static final String"priorEquivalentSampleSize"public static final String"probCycle"public static final String"probRemoveColumn"public static final String"probTwoCycle"public static final String"probabilityOfEdge"public static final String"pythonCiServer"public static final String"pythonExe"public static final String"raRadius"public static final String"randomSelectionSize"public static final String"randomizeColumns"public static final String"rbRadius"public static final String"rcit.approx"public static final String"rcit.centerFeatures"public static final String"rcit.lambda"public static final String"rcit.rcitMode"public static final String"rcitNumF"public static final String"rcitNumF2"public static final String"rcitNumFeatures"public static final String"rcit.numFeaturesXY"public static final String"rcit.numFeaturesZ"public static final String"rcit.permutations"public static final String"recoveryOddsThreshold"public static final String"recursiveDepth"public static final String"regularizationLambda"public static final String"reharvestSepsets"public static final String"removeAlmostCycles"public static final String"removeEffectNodes"public static final String"requireImapStates"public static final String"resamplingEnsemble"public static final String"resamplingWithReplacement"public static final String"rescueAction"public static final String"rlcdAllowNonLeafX"public static final String"rlcdCeilingValue"public static final String"rlcdCensorCeiling"public static final String"rlcdCheckV"public static final String"rlcdKnowledgeInStage1"public static final String"rlcdLatentGate"public static final String"rlcdMaxK"public static final String"rlcdObservedExplanationAlpha"public static final String"rlcdObservedExplanationCheck"public static final String"rlcdPartitionCliqueThreshold"public static final String"rlcdQualifyObservedCauses"public static final String"rlcdResolveTwoIndicatorLatents"public static final String"rlcdStabilityRuns"public static final String"rlcdStabilityTimeLimit"public static final String"rlcdStage1Fges"public static final String"rlcdStage1None"public static final String"rlcdUnfoldCovers"public static final String"sampleSize"public static final String"sampleStyle"public static final String"saveBootstrapGraphs"public static final String"saveLatentVars"public static final String"scaleFreeAlpha"public static final String"scaleFreeBeta"public static final String"scaleFreeDeltaIn"public static final String"scaleFreeDeltaOut"public static final String"scalingFactor"public static final String"scoreCheckPenaltyDiscount"public static final String"scoreTestCalibratedPValues"public static final String"seed"public static final String"selectionMinEffect"public static final String"selfLoopCoef"public static final String"semBicRule"public static final String"semBicStructurePrior"public static final String"semGicRule"public static final String"sepsetFinderMethod"public static final String"shrinkageMode"public static final String"significanceChecked"public static final String"singularityLambda"public static final String"skewEdgeThreshold"public static final String"skipNumRecords"public static final String"splitDelta"public static final String"stableFAS"public static final String"standardize"public static final String"StARS.cutoff"public static final String"startFromCompleteGraph"public static final String"stratifiedPermutations"public static final String"stratifyByDomain"public static final String"structurePrior"public static final String"symmetricFirstStep"public static final String"targetName"public static final String"targets"public static final String"testTimeout"public static final String"tetrad_test_bpc"public static final String"tetrad_test_fofc"public static final String"thr"public static final String"thresholdBHat"public static final String"thresholdForNumEigenvalues"public static final String"thresholdNoRandomConstrainSearch"public static final String"thresholdNoRandomDataSearch"public static final String"thresholdW"public static final String"timeLag"public static final String"timeLagReplicatingGraph"public static final String"timeout"public static final String"topBracket"public static final String"topK"public static final String"trffFfFeatures"public static final String"trffNu"public static final String"trffRidge"public static final String"trffSymmetrized"public static final String"trimmingStyle"public static final String"truncationLimit"public static final String"tscClusterRank"public static final String"tscClusterSize"public static final String"tscEnableHierarchy"public static final String"tscMinRankDrop"public static final String"tscMinRedundancy"public static final String"tscMode"public static final String"tscPcUseBoss"public static final String"tscSingletonPolicy"public static final String"twoCycleAlpha"public static final String"twoCycleScreeningThreshold"public static final String"upperBound"public static final String"useAdaptiveZBins"public static final String"useBes"public static final String"useBesDefaultTrue"public static final String"useBossAdjacencies"public static final String"useCorrDiffAdjacencies"public static final String"useDataOrder"public static final String"useEquivalenceRemoval"public static final String"useFasAdjacencies"public static final String"useGap"public static final String"useIlsRestarts"public static final String"useMaxAcrossStrata"public static final String"useMaxPHeuristic"public static final String"useMaxPOrientationHeuristic"public static final String"usePass0"public static final String"useSaturatingStep"public static final String"useSkewAdjacencies"public static final String"useVarimax"public static final String"varHigh"public static final String"varLow"public static final String"verbose"public static final String"wThreshold"public static final String"zSRiskBound" -
edu.cmu.tetrad.util.RocCalculator
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edu.cmu.tetrad.util.TextTableModifier and TypeConstant FieldValue
public static final int0public static final int1 -
edu.cmu.tetrad.util.TMath
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edu.cmu.tetrad.util.dist.Distribution