Package edu.cmu.tetrad.util

Class Params

java.lang.Object
edu.cmu.tetrad.util.Params
public final class Params extends Object
May 7, 2019 2:53:27 PM
Version:
$Id: $Id
Author:
Kevin V. Bui (kvb2@pitt.edu)

  • Field Details

    • ADD_ORIGINAL_DATASET

      public static final String ADD_ORIGINAL_DATASET
      Constant ADD_ORIGINAL_DATASET="addOriginalDataset"
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    • ALPHA

      public static final String ALPHA
      Constant ALPHA="alpha"
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    • FOFC_ALPHA

      public static final String FOFC_ALPHA
      Constant FOFC_ALPHA="fofcAlpha"
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    • APPLY_R1

      public static final String APPLY_R1
      Constant APPLY_R1="applyR1"
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    • AVG_DEGREE

      public static final String AVG_DEGREE
      Constant AVG_DEGREE="avgDegree"
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    • BASIS_TYPE

      public static final String BASIS_TYPE
      Constant BASIS_TYPE="basisType"
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    • BASIS_SCALE

      public static final String BASIS_SCALE
      Constant BASIS_TYPE="basisType"
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    • CCI_SCORE_ALPHA

      public static final String CCI_SCORE_ALPHA
      Constant CCI_SCORE_ALPHA="cciScoreAlpha"
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    • CG_EXACT

      public static final String CG_EXACT
      Constant CG_EXACT="cgExact"
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    • COEF_HIGH

      public static final String COEF_HIGH
      Constant COEF_HIGH="coefHigh"
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    • COEF_LOW

      public static final String COEF_LOW
      Constant COEF_LOW="coefLow"
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    • COEF_SYMMETRIC

      public static final String COEF_SYMMETRIC
      Constant COEF_SYMMETRIC="coefSymmetric"
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    • COLLIDER_DISCOVERY_RULE

      public static final String COLLIDER_DISCOVERY_RULE
      Constant COLLIDER_DISCOVERY_RULE="colliderDiscoveryRule"
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    • COMPLETE_RULE_SET_USED

      public static final String COMPLETE_RULE_SET_USED
      Constant COMPLETE_RULE_SET_USED="completeRuleSetUsed"
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    • CHECK_ADJACENCY_SEPSETS

      public static final String CHECK_ADJACENCY_SEPSETS
      Constant CHECK_ADJACENCY_SEPSETS="checkAdjacencySepsets"
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    • SEPSET_FINDER_METHOD

      public static final String SEPSET_FINDER_METHOD
      Constant SEPSET_FINDER_METHOD="sepsetFinderMethod"
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    • CONCURRENT_FAS

      public static final String CONCURRENT_FAS
      Constant CONCURRENT_FAS="concurrentFAS"
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    • CONFLICT_RULE

      public static final String CONFLICT_RULE
      Constant CONFLICT_RULE="conflictRule"
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    • GUARANTEE_CPDAG

      public static final String GUARANTEE_CPDAG
      Constant GUARANTEE_CPDAG="guaranteeCpdag"
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    • CONNECTED

      public static final String CONNECTED
      Constant CONNECTED="connected"
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    • COV_HIGH

      public static final String COV_HIGH
      Constant COV_HIGH="covHigh"
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    • COV_LOW

      public static final String COV_LOW
      Constant COV_LOW="covLow"
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    • COV_SYMMETRIC

      public static final String COV_SYMMETRIC
      Constant COV_SYMMETRIC="covSymmetric"
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    • CUTOFF_IND_TEST

      public static final String CUTOFF_IND_TEST
      Constant CUTOFF_IND_TEST="cutoffIndTest"
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    • DATA_TYPE

      public static final String DATA_TYPE
      Constant DATA_TYPE="dataType"
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    • DEPTH

      public static final String DEPTH
      Constant DEPTH="depth"
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    • DETERMINISM_THRESHOLD

      public static final String DETERMINISM_THRESHOLD
      Constant DETERMINISM_THRESHOLD="determinismThreshold"
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    • DIFFERENT_GRAPHS

      public static final String DIFFERENT_GRAPHS
      Constant DIFFERENT_GRAPHS="differentGraphs"
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    • DISCRETIZE

      public static final String DISCRETIZE
      Constant DISCRETIZE="discretize"
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    • DO_COLLIDER_ORIENTATION

      public static final String DO_COLLIDER_ORIENTATION
      Constant DO_COLLIDER_ORIENTATION="doColliderOrientation"
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    • ERRORS_NORMAL

      public static final String ERRORS_NORMAL
      Constant ERRORS_NORMAL="errorsNormal"
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    • SKEW_EDGE_THRESHOLD

      public static final String SKEW_EDGE_THRESHOLD
      Constant SKEW_EDGE_THRESHOLD="skewEdgeThreshold"
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    • TWO_CYCLE_SCREENING_THRESHOLD

      public static final String TWO_CYCLE_SCREENING_THRESHOLD
      Constant TWO_CYCLE_SCREENING_THRESHOLD="twoCycleScreeningThreshold"
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    • FASK_DELTA

      public static final String FASK_DELTA
      Constant FASK_DELTA="faskDelta"
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    • FASK_LEFT_RIGHT_RULE

      public static final String FASK_LEFT_RIGHT_RULE
      Constant FASK_LEFT_RIGHT_RULE="faskLeftRightRule"
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    • FASK_ADJACENCY_METHOD

      public static final String FASK_ADJACENCY_METHOD
      Constant FASK_ADJACENCY_METHOD="faskAdjacencyMethod"
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    • FASK_NONEMPIRICAL

      public static final String FASK_NONEMPIRICAL
      Constant FASK_NONEMPIRICAL="faskNonempirical"
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    • FAITHFULNESS_ASSUMED

      public static final String FAITHFULNESS_ASSUMED
      Constant FAITHFULNESS_ASSUMED="faithfulnessAssumed"
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    • FAS_RULE

      public static final String FAS_RULE
      Constant FAS_RULE="fasRule"
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    • FAST_ICA_A

      public static final String FAST_ICA_A
      Constant FAST_ICA_A="fastIcaA"
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    • FAST_ICA_MAX_ITER

      public static final String FAST_ICA_MAX_ITER
      Constant FAST_ICA_MAX_ITER="fastIcaMaxIter"
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    • FAST_ICA_TOLERANCE

      public static final String FAST_ICA_TOLERANCE
      Constant FAST_ICA_TOLERANCE="fastIcaTolerance"
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    • THRESHOLD_B

      public static final String THRESHOLD_B
      Constant THRESHOLD_B="thresholdBHat"
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    • GUARANTEE_ACYCLIC

      public static final String GUARANTEE_ACYCLIC
      Constant GUARANTEE_ACYCLIC="guaranteeAcyclic"
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    • THRESHOLD_W

      public static final String THRESHOLD_W
      Constant THRESHOLD_SPINE="thresholdSpine"
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    • ORIENTATION_ALPHA

      public static final String ORIENTATION_ALPHA
      Constant ORIENTATION_ALPHA="orientationAlpha"
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    • FISHER_EPSILON

      public static final String FISHER_EPSILON
      Constant FISHER_EPSILON="fisherEpsilon"
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    • GENERAL_SEM_ERROR_TEMPLATE

      public static final String GENERAL_SEM_ERROR_TEMPLATE
      Constant GENERAL_SEM_ERROR_TEMPLATE="generalSemErrorTemplate"
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    • GENERAL_SEM_FUNCTION_TEMPLATE_LATENT

      public static final String GENERAL_SEM_FUNCTION_TEMPLATE_LATENT
      Constant GENERAL_SEM_FUNCTION_TEMPLATE_LATENT="generalSemFunctionTemplateLatent"
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    • GENERAL_SEM_FUNCTION_TEMPLATE_MEASURED

      public static final String GENERAL_SEM_FUNCTION_TEMPLATE_MEASURED
      Constant GENERAL_SEM_FUNCTION_TEMPLATE_MEASURED="generalSemFunctionTemplateMeasured"
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    • GENERAL_SEM_PARAMETER_TEMPLATE

      public static final String GENERAL_SEM_PARAMETER_TEMPLATE
      Constant GENERAL_SEM_PARAMETER_TEMPLATE="generalSemParameterTemplate"
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    • GUARANTEE_IID

      public static final String GUARANTEE_IID
      Constant GUARANTEE_IID="guaranteeIid"
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    • IA

      public static final String IA
      Constant IA="ia"
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    • INCLUDE_NEGATIVE_COEFS

      public static final String INCLUDE_NEGATIVE_COEFS
      Constant INCLUDE_NEGATIVE_COEFS="includeNegativeCoefs"
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    • INCLUDE_NEGATIVE_SKEWS_FOR_BETA

      public static final String INCLUDE_NEGATIVE_SKEWS_FOR_BETA
      Constant INCLUDE_NEGATIVE_SKEWS_FOR_BETA="includeNegativeSkewsForBeta"
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    • INCLUDE_POSITIVE_COEFS

      public static final String INCLUDE_POSITIVE_COEFS
      Constant INCLUDE_POSITIVE_COEFS="includePositiveCoefs"
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    • INCLUDE_POSITIVE_SKEWS_FOR_BETA

      public static final String INCLUDE_POSITIVE_SKEWS_FOR_BETA
      Constant INCLUDE_POSITIVE_SKEWS_FOR_BETA="includePositiveSkewsForBeta"
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    • INCLUDE_STRUCTURE_MODEL

      public static final String INCLUDE_STRUCTURE_MODEL
      Constant INCLUDE_STRUCTURE_MODEL="include_structure_model"
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    • INTERVAL_BETWEEN_RECORDINGS

      public static final String INTERVAL_BETWEEN_RECORDINGS
      Constant INTERVAL_BETWEEN_RECORDINGS="intervalBetweenRecordings"
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    • INTERVAL_BETWEEN_SHOCKS

      public static final String INTERVAL_BETWEEN_SHOCKS
      Constant INTERVAL_BETWEEN_SHOCKS="intervalBetweenShocks"
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    • IPEN

      public static final String IPEN
      Constant IPEN="ipen"
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    • IS

      public static final String IS
      Constant IS="is"
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    • ITR

      public static final String ITR
      Constant ITR="itr"
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    • KCI_ALPHA

      public static final String KCI_ALPHA
      Constant KCI_ALPHA="kciAlpha"
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    • KCI_CUTOFF

      public static final String KCI_CUTOFF
      Constant KCI_CUTOFF="kciCutoff"
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    • KCI_EPSILON

      public static final String KCI_EPSILON
      Constant KCI_EPSILON="kciEpsilon"
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    • KCI_NUM_BOOTSTRAPS

      public static final String KCI_NUM_BOOTSTRAPS
      Constant KCI_NUM_BOOTSTRAPS="kciNumBootstraps"
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    • KCI_USE_APPROXIMATION

      public static final String KCI_USE_APPROXIMATION
      Constant KCI_USE_APPROXIMATION="kciUseApproximation"
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    • SCALING_FACTOR

      public static final String SCALING_FACTOR
      Constant BANDWIDTH_ADJUSTMENT="scalingFactor"
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    • KERNEL_REGRESSION_SAMPLE_SIZE

      public static final String KERNEL_REGRESSION_SAMPLE_SIZE
      Constant KERNEL_REGRESSION_SAMPLE_SIZE="kernelRegressionSampleSize"
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    • KERNEL_TYPE

      public static final String KERNEL_TYPE
      Constant KERNEL_TYPE="kernelType"
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    • POLYNOMIAL_DEGREE

      public static final String POLYNOMIAL_DEGREE
      Constant POLYNOMIAL_DEGREE="polynomialDegree"
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    • POLYNOMIAL_CONSTANT

      public static final String POLYNOMIAL_CONSTANT
      Constant POLYNOMIAL_CONSTANT="polynomialConstant"
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    • KERNEL_WIDTH

      public static final String KERNEL_WIDTH
      Constant KERNEL_WIDTH="kernelWidth"
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    • LATENT_GROUP_SPECS

      public static final String LATENT_GROUP_SPECS
      Constant LATENT_GROUP_SPECTS="latentGroupSpecs"
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    • LATENT_MEASURED_IMPURE_PARENTS

      public static final String LATENT_MEASURED_IMPURE_PARENTS
      Constant LATENT_MEASURED_IMPURE_PARENTS="latentMeasuredImpureParents"
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    • LOWER_BOUND

      public static final String LOWER_BOUND
      Constant LOWER_BOUND="lowerBound"
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    • MAX_CATEGORIES

      public static final String MAX_CATEGORIES
      Constant MAX_CATEGORIES="maxCategories"
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    • MAX_DEGREE

      public static final String MAX_DEGREE
      Constant MAX_DEGREE="maxDegree"
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    • MAX_DISTINCT_VALUES_DISCRETE

      public static final String MAX_DISTINCT_VALUES_DISCRETE
      Constant MAX_DISTINCT_VALUES_DISCRETE="maxDistinctValuesDiscrete"
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    • MAX_INDEGREE

      public static final String MAX_INDEGREE
      Constant MAX_INDEGREE="maxIndegree"
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    • MAX_ITERATIONS

      public static final String MAX_ITERATIONS
      Constant MAX_ITERATIONS="maxIterations"
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    • MAX_OUTDEGREE

      public static final String MAX_OUTDEGREE
      Constant MAX_OUTDEGREE="maxOutdegree"
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    • MAX_DISCRIMINATING_PATH_LENGTH

      public static final String MAX_DISCRIMINATING_PATH_LENGTH
      Constant MAX_PATH_LENGTH="maxPathLength"
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    • MAXIT

      public static final String MAXIT
      Constant MAXIT="maxit"
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    • MEAN_HIGH

      public static final String MEAN_HIGH
      Constant MEAN_HIGH="meanHigh"
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    • MEAN_LOW

      public static final String MEAN_LOW
      Constant MEAN_LOW="meanLow"
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    • MEASURED_MEASURED_IMPURE_ASSOCIATIONS

      public static final String MEASURED_MEASURED_IMPURE_ASSOCIATIONS
      Constant MEASURED_MEASURED_IMPURE_ASSOCIATIONS="measuredMeasuredImpureAssociations"
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    • MEASURED_MEASURED_IMPURE_PARENTS

      public static final String MEASURED_MEASURED_IMPURE_PARENTS
      Constant MEASURED_MEASURED_IMPURE_PARENTS="measuredMeasuredImpureParents"
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    • MEASUREMENT_MODEL_DEGREE

      public static final String MEASUREMENT_MODEL_DEGREE
      Constant MEASUREMENT_MODEL_DEGREE="measurementModelDegree"
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    • MEASUREMENT_VARIANCE

      public static final String MEASUREMENT_VARIANCE
      Constant MEASUREMENT_VARIANCE="measurementVariance"
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    • MGM_PARAM1

      public static final String MGM_PARAM1
      Constant MGM_PARAM1="mgmParam1"
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    • MGM_PARAM2

      public static final String MGM_PARAM2
      Constant MGM_PARAM2="mgmParam2"
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    • MGM_PARAM3

      public static final String MGM_PARAM3
      Constant MGM_PARAM3="mgmParam3"
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    • MIN_CATEGORIES

      public static final String MIN_CATEGORIES
      Constant MIN_CATEGORIES="minCategories"
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    • NO_RANDOMLY_DETERMINED_INDEPENDENCE

      public static final String NO_RANDOMLY_DETERMINED_INDEPENDENCE
      Constant NO_RANDOMLY_DETERMINED_INDEPENDENCE="noRandomlyDeterminedIndependence"
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    • NUM_BASIS_FUNCTIONS

      public static final String NUM_BASIS_FUNCTIONS
      Constant NUM_BASIS_FUNCTIONS="numBasisFunctions"
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    • NUM_BSC_BOOTSTRAP_SAMPLES

      public static final String NUM_BSC_BOOTSTRAP_SAMPLES
      Constant NUM_BSC_BOOTSTRAP_SAMPLES="numBscBootstrapSamples"
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    • NUM_CATEGORIES

      public static final String NUM_CATEGORIES
      Constant NUM_CATEGORIES="numCategories"
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    • NUM_CATEGORIES_TO_DISCRETIZE

      public static final String NUM_CATEGORIES_TO_DISCRETIZE
      Constant NUM_CATEGORIES_TO_DISCRETIZE="numCategoriesToDiscretize"
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    • NUM_LAGS

      public static final String NUM_LAGS
      Constant NUM_LAGS="numLags"
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    • NUM_LATENTS

      public static final String NUM_LATENTS
      Constant NUM_LATENTS="numLatents"
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    • NUM_MEASURES

      public static final String NUM_MEASURES
      Constant NUM_MEASURES="numMeasures"
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    • PROBABILITY_OF_EDGE

      public static final String PROBABILITY_OF_EDGE
      Constant PROBABILITY_OF_EDGE="probabilityOfEdge"
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    • NUM_RANDOMIZED_SEARCH_MODELS

      public static final String NUM_RANDOMIZED_SEARCH_MODELS
      Constant NUM_RANDOMIZED_SEARCH_MODELS="numRandomizedSearchModels"
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    • NUM_RUNS

      public static final String NUM_RUNS
      Constant NUM_RUNS="numRuns"
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    • NUM_STRUCTURAL_EDGES

      public static final String NUM_STRUCTURAL_EDGES
      Constant NUM_STRUCTURAL_EDGES="mimNumStructuralEdges"
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    • NUM_STRUCTURAL_NODES

      public static final String NUM_STRUCTURAL_NODES
      Constant NUM_STRUCTURAL_NODES="mimNumStructuralNodes"
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    • META_EDGE_CONNECTION_TYPE

      public static final String META_EDGE_CONNECTION_TYPE
      Constant META_EDGE_CONNECTION_TYPE="mimMetaEdgeConnectionType"
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    • NUMBER_RESAMPLING

      public static final String NUMBER_RESAMPLING
      Constant NUMBER_RESAMPLING="numberResampling"
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    • ORIENT_TOWARD_DCONNECTIONS

      public static final String ORIENT_TOWARD_DCONNECTIONS
      Constant ORIENT_TOWARD_DCONNECTIONS="orientTowardDConnections"
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    • ORIENT_VISIBLE_FEEDBACK_LOOPS

      public static final String ORIENT_VISIBLE_FEEDBACK_LOOPS
      Constant ORIENT_VISIBLE_FEEDBACK_LOOPS="orientVisibleFeedbackLoops"
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    • OUTPUT_RBD

      public static final String OUTPUT_RBD
      Constant OUTPUT_RBD="outputRBD"
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    • PARALLELIZED

      public static final String PARALLELIZED
      Constant PARALLELIZED="parallelized"
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    • PENALTY_DISCOUNT

      public static final String PENALTY_DISCOUNT
      Constant PENALTY_DISCOUNT="penaltyDiscount"
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    • PENALTY_DISCOUNT_ZS

      public static final String PENALTY_DISCOUNT_ZS
      Constant PENALTY_DISCOUNT_ZS="penaltyDiscountZs"
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    • TRUNCATION_LIMIT

      public static final String TRUNCATION_LIMIT
      Constant TRUNCATION_LIMIT="truncationLimit"
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    • EBIC_GAMMA

      public static final String EBIC_GAMMA
      Constant EBIC_GAMMA="ebicGamma"
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    • PERCENT_DISCRETE

      public static final String PERCENT_DISCRETE
      Constant PERCENT_DISCRETE="percentDiscrete"
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    • PERCENT_RESAMPLE_SIZE

      public static final String PERCENT_RESAMPLE_SIZE
      Constant PERCENT_RESAMPLE_SIZE="percentResampleSize"
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    • DO_POSSIBLE_DSEP

      public static final String DO_POSSIBLE_DSEP
      Constant POSSIBLE_DSEP_DONE="doPossibleDsep"
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    • PROB_CYCLE

      public static final String PROB_CYCLE
      Constant PROB_CYCLE="probCycle"
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    • PROB_TWO_CYCLE

      public static final String PROB_TWO_CYCLE
      Constant PROB_TWO_CYCLE="probTwoCycle"
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    • RANDOM_SELECTION_SIZE

      public static final String RANDOM_SELECTION_SIZE
      Constant RANDOM_SELECTION_SIZE="randomSelectionSize"
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    • RANDOMIZE_COLUMNS

      public static final String RANDOMIZE_COLUMNS
      Constant RANDOMIZE_COLUMNS="randomizeColumns"
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    • RCIT_NUM_FEATURES

      public static final String RCIT_NUM_FEATURES
      Constant RCIT_NUM_FEATURES="rcitNumFeatures"
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    • RESAMPLING_ENSEMBLE

      public static final String RESAMPLING_ENSEMBLE
      Constant RESAMPLING_ENSEMBLE="resamplingEnsemble"
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    • RESAMPLING_WITH_REPLACEMENT

      public static final String RESAMPLING_WITH_REPLACEMENT
      Constant RESAMPLING_WITH_REPLACEMENT="resamplingWithReplacement"
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    • PRIOR_EQUIVALENT_SAMPLE_SIZE

      public static final String PRIOR_EQUIVALENT_SAMPLE_SIZE
      Constant PRIOR_EQUIVALENT_SAMPLE_SIZE="priorEquivalentSampleSize"
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    • SAMPLE_SIZE

      public static final String SAMPLE_SIZE
      Constant SAMPLE_SIZE="sampleSize"
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    • SAVE_LATENT_VARS

      public static final String SAVE_LATENT_VARS
      Constant SAVE_LATENT_VARS="saveLatentVars"
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    • SCALE_FREE_ALPHA

      public static final String SCALE_FREE_ALPHA
      Constant SCALE_FREE_ALPHA="scaleFreeAlpha"
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    • SCALE_FREE_BETA

      public static final String SCALE_FREE_BETA
      Constant SCALE_FREE_BETA="scaleFreeBeta"
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    • SCALE_FREE_DELTA_IN

      public static final String SCALE_FREE_DELTA_IN
      Constant SCALE_FREE_DELTA_IN="scaleFreeDeltaIn"
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    • SCALE_FREE_DELTA_OUT

      public static final String SCALE_FREE_DELTA_OUT
      Constant SCALE_FREE_DELTA_OUT="scaleFreeDeltaOut"
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    • SELF_LOOP_COEF

      public static final String SELF_LOOP_COEF
      Constant SELF_LOOP_COEF="selfLoopCoef"
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    • SKIP_NUM_RECORDS

      public static final String SKIP_NUM_RECORDS
      Constant SKIP_NUM_RECORDS="skipNumRecords"
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    • STABLE_FAS

      public static final String STABLE_FAS
      Constant STABLE_FAS="stableFAS"
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    • STANDARDIZE

      public static final String STANDARDIZE
      Constant STANDARDIZE="standardize"
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    • STRUCTURE_PRIOR

      public static final String STRUCTURE_PRIOR
      Constant STRUCTURE_PRIOR="structurePrior"
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    • SYMMETRIC_FIRST_STEP

      public static final String SYMMETRIC_FIRST_STEP
      Constant SYMMETRIC_FIRST_STEP="symmetricFirstStep"
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    • TARGET_NAME

      public static final String TARGET_NAME
      Constant TARGET_NAME="targetName"
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    • THR

      public static final String THR
      Constant THR="thr"
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    • THRESHOLD_FOR_NUM_EIGENVALUES

      public static final String THRESHOLD_FOR_NUM_EIGENVALUES
      Constant THRESHOLD_FOR_NUM_EIGENVALUES="thresholdForNumEigenvalues"
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    • TWO_CYCLE_ALPHA

      public static final String TWO_CYCLE_ALPHA
      Constant TWO_CYCLE_ALPHA="twoCycleAlpha"
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    • UPPER_BOUND

      public static final String UPPER_BOUND
      Constant UPPER_BOUND="upperBound"
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    • USE_CORR_DIFF_ADJACENCIES

      public static final String USE_CORR_DIFF_ADJACENCIES
      Constant USE_CORR_DIFF_ADJACENCIES="useCorrDiffAdjacencies"
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    • USE_FAS_ADJACENCIES

      public static final String USE_FAS_ADJACENCIES
      Constant USE_FAS_ADJACENCIES="useFasAdjacencies"
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    • USE_GAP

      public static final String USE_GAP
      Constant USE_GAP="useGap"
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    • USE_MAX_P_HEURISTIC

      public static final String USE_MAX_P_HEURISTIC
      Constant USE_MAX_P_HEURISTIC="useMaxPHeuristic"
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    • USE_MAX_P_ORIENTATION_HEURISTIC

      public static final String USE_MAX_P_ORIENTATION_HEURISTIC
      Constant USE_MAX_P_ORIENTATION_HEURISTIC="useMaxPOrientationHeuristic"
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    • MaX_PAX_P_ORIENTATION_HEURISTIC_MAX_LENGTH

      public static final String MaX_PAX_P_ORIENTATION_HEURISTIC_MAX_LENGTH
      Constant MaX_PAX_P_ORIENTATION_HEURISTIC_MAX_LENGTH="maxPaxPOrientationHeuristicMaxLength"
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    • USE_SKEW_ADJACENCIES

      public static final String USE_SKEW_ADJACENCIES
      Constant USE_SKEW_ADJACENCIES="useSkewAdjacencies"
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    • TETRAD_TEST_BPC

      public static final String TETRAD_TEST_BPC
      Constant TETRAD_TEST_BPC="tetrad_test_bpc"
      See Also:

    • TETRAD_TEST_FOFC

      public static final String TETRAD_TEST_FOFC
      Constant TETRAD_TEST_FOFC="tetrad_test_fofc"
      See Also:

    • CHECK_TYPE

      public static final String CHECK_TYPE
      Constant CHECK_TYPE="checkType"
      See Also:

    • VAR_HIGH

      public static final String VAR_HIGH
      Constant VAR_HIGH="varHigh"
      See Also:

    • VAR_LOW

      public static final String VAR_LOW
      Constant VAR_LOW="varLow"
      See Also:

    • VERBOSE

      public static final String VERBOSE
      Constant VERBOSE="verbose"
      See Also:

    • SEM_BIC_RULE

      public static final String SEM_BIC_RULE
      Constant SEM_BIC_RULE="semBicRule"
      See Also:

    • SEM_GIC_RULE

      public static final String SEM_GIC_RULE
      Constant SEM_GIC_RULE="semGicRule"
      See Also:

    • SEM_BIC_STRUCTURE_PRIOR

      public static final String SEM_BIC_STRUCTURE_PRIOR
      Constant SEM_BIC_STRUCTURE_PRIOR="semBicStructurePrior"
      See Also:

    • POISSON_LAMBDA

      public static final String POISSON_LAMBDA
      Constant POISSON_LAMBDA="poissonLambda"
      See Also:

    • USE_BES

      public static final String USE_BES
      Constant USE_BES="useBes"
      See Also:

    • NUM_STARTS

      public static final String NUM_STARTS
      Constant NUM_STARTS="numStarts"
      See Also:

    • CACHE_SCORES

      public static final String CACHE_SCORES
      Constant CACHE_SCORES="cacheScores"
      See Also:

    • BOSS_ALG

      public static final String BOSS_ALG
      Constant BOSS_ALG="bossAlg"
      See Also:

    • OUTPUT_CPDAG

      public static final String OUTPUT_CPDAG
      Constant OUTPUT_CPDAG="outputCpdag"
      See Also:

    • ZS_RISK_BOUND

      public static final String ZS_RISK_BOUND
      Constant ZS_RISK_BOUND="zSRiskBound"
      See Also:

    • NUM_ROUNDS

      public static final String NUM_ROUNDS
      Constant NUM_ROUNDS="numRounds"
      See Also:

    • GRASP_CHECK_COVERING

      public static final String GRASP_CHECK_COVERING
      Constant GRASP_CHECK_COVERING="graspCheckCovering"
      See Also:

    • GRASP_FORWARD_TUCK_ONLY

      public static final String GRASP_FORWARD_TUCK_ONLY
      Constant GRASP_FORWARD_TUCK_ONLY="graspForwardTuckOnly"
      See Also:

    • GRASP_BREAK_AFTER_IMPROVEMENT

      public static final String GRASP_BREAK_AFTER_IMPROVEMENT
      Constant GRASP_BREAK_AFTER_IMPROVEMENT="graspBreakAFterImprovement"
      See Also:

    • GRASP_ORDERED_ALG

      public static final String GRASP_ORDERED_ALG
      Constant GRASP_ORDERED_ALG="graspOrderedAlg"
      See Also:

    • GRASP_USE_SCORE

      public static final String GRASP_USE_SCORE
      Constant GRASP_USE_SCORE="graspUseScore"
      See Also:

    • GRASP_USE_RASKUTTI_UHLER

      public static final String GRASP_USE_RASKUTTI_UHLER
      Constant GRASP_USE_RASKUTTI_UHLER="graspUseRaskuttiUhler"
      See Also:

    • USE_DATA_ORDER

      public static final String USE_DATA_ORDER
      Constant USE_DATA_ORDER="useDataOrder"
      See Also:

    • ALLOW_INTERNAL_RANDOMNESS

      public static final String ALLOW_INTERNAL_RANDOMNESS
      Constant ALLOW_INTERNAL_RANDOMNESS="allowInternalRandomness"
      See Also:

    • GRASP_DEPTH

      public static final String GRASP_DEPTH
      Constant GRASP_DEPTH="graspDepth"
      See Also:

    • GRASP_SINGULAR_DEPTH

      public static final String GRASP_SINGULAR_DEPTH
      Constant GRASP_SINGULAR_DEPTH="graspSingularDepth"
      See Also:

    • GRASP_NONSINGULAR_DEPTH

      public static final String GRASP_NONSINGULAR_DEPTH
      Constant GRASP_NONSINGULAR_DEPTH="graspNonSingularDepth"
      See Also:

    • GRASP_TOLERANCE_DEPTH

      public static final String GRASP_TOLERANCE_DEPTH
      Constant GRASP_TOLERANCE_DEPTH="graspToleranceDepth"
      See Also:

    • GRASP_ALG

      public static final String GRASP_ALG
      Constant GRASP_ALG="graspAlg"
      See Also:

    • TIMEOUT

      public static final String TIMEOUT
      Constant TIMEOUT="timeout"
      See Also:

    • TEST_TIMEOUT

      public static final String TEST_TIMEOUT
      Constant TEST_TIMEOUT="testTimeout"
      See Also:

    • GRASP_USE_VP_SCORING

      public static final String GRASP_USE_VP_SCORING
      Constant GRASP_USE_VP_SCORING="graspUseVpScoring"
      See Also:

    • SIMULATION_ERROR_TYPE

      public static final String SIMULATION_ERROR_TYPE
      Constant SIMULATION_ERROR_TYPE="simulationErrorType"
      See Also:

    • SIMULATION_PARAM1

      public static final String SIMULATION_PARAM1
      Constant SIMULATION_PARAM1="simulationParam1"
      See Also:

    • SIMULATION_PARAM2

      public static final String SIMULATION_PARAM2
      Constant SIMULATION_PARAM2="simulationParam2"
      See Also:

    • SELECTION_MIN_EFFECT

      public static final String SELECTION_MIN_EFFECT
      Constant SELECTION_MIN_EFFECT="selectionMinEffect"
      See Also:

    • NUM_SUBSAMPLES

      public static final String NUM_SUBSAMPLES
      Constant NUM_SUBSAMPLES="numSubsamples"
      See Also:

    • TARGETS

      public static final String TARGETS
      Constant TARGETS="targets"
      See Also:

    • MB

      public static final String MB
      Constant MB="mb"
      See Also:

    • TOP_BRACKET

      public static final String TOP_BRACKET
      Constant TOP_BRACKET="topBracket"
      See Also:

    • TIME_LAG

      public static final String TIME_LAG
      Constant TIME_LAG="timeLag"
      See Also:

    • PRECOMPUTE_COVARIANCES

      public static final String PRECOMPUTE_COVARIANCES
      Constant PRECOMPUTE_COVARIANCES="precomputeCovariances"
      See Also:

    • IMAGES_META_ALG

      public static final String IMAGES_META_ALG
      Constant IMAGES_META_ALG="imagesMetaAlg"
      See Also:

    • SEED

      public static final String SEED
      Constant SEED="seed"
      See Also:

    • SIGNIFICANCE_CHECKED

      public static final String SIGNIFICANCE_CHECKED
      Constant SIGNIFICANCE_CHECKED="significanceChecked"
      See Also:

    • PROB_REMOVE_COLUMN

      public static final String PROB_REMOVE_COLUMN
      Constant PROB_REMOVE_COLUMN="probRemoveColumn"
      See Also:

    • SAVE_BOOTSTRAP_GRAPHS

      public static final String SAVE_BOOTSTRAP_GRAPHS
      Constant SAVE_BOOTSTRAP_GRAPHS="saveBootstrapGraphs"
      See Also:

    • LAMBDA1

      public static final String LAMBDA1
      Constant LAMBDA1="lambda1"
      See Also:

    • W_THRESHOLD

      public static final String W_THRESHOLD
      Constant W_THRESHOLD="wThreshold"
      See Also:

    • CPDAG

      public static final String CPDAG
      Constant CPDAG="cpdag"
      See Also:

    • TRIMMING_STYLE

      public static final String TRIMMING_STYLE
      Constant TRIMMING_STYLE="trimmingStyle"
      See Also:

    • NUMBER_OF_EXPANSIONS

      public static final String NUMBER_OF_EXPANSIONS
      Constant NUMBER_OF_EXPANSIONS="numberOfExpansions"
      See Also:

    • CSTAR_CPDAG_ALGORITHM

      public static final String CSTAR_CPDAG_ALGORITHM
      Constant CSTAR_CPDAG_ALGORITHM="cstarCpdagAlgorithm"
      See Also:

    • FILE_OUT_PATH

      public static final String FILE_OUT_PATH
      Constant FILE_OUT_PATH="fileOutPath"
      See Also:

    • REMOVE_EFFECT_NODES

      public static final String REMOVE_EFFECT_NODES
      Constant REMOVE_EFFECT_NODES="removeEffectNodes"
      See Also:

    • SAMPLE_STYLE

      public static final String SAMPLE_STYLE
      Constant SAMPLE_STYLE="sampleStyle"
      See Also:

    • NUM_THREADS

      public static final String NUM_THREADS
      Constant NUM_THREADS="numThreads"
      See Also:

    • BOOTSTRAPPING_NUM_THREADS

      public static final String BOOTSTRAPPING_NUM_THREADS
      Constant BOOTSTRAPPING_NUM_THEADS="bootstrappingNumThreads"
      See Also:

    • SINGULARITY_LAMBDA

      public static final String SINGULARITY_LAMBDA
      Constant SINGULARITY_LAMBDA="singularityLambda"
      See Also:

    • SHRINKAGE_MODE

      public static final String SHRINKAGE_MODE
      Constant SHRINKAGE_MODE="shrinkageMode"
      See Also:

    • REGULARIZATION_LAMBDA

      public static final String REGULARIZATION_LAMBDA
      Constant REGULARIZATION_LAMBDA="regularizationLambda"
      See Also:

    • CONDITIONING_THRESHOLD

      public static final String CONDITIONING_THRESHOLD
      Constant CONDITIONING_THRESHOLD="conditioningThreshold"
      See Also:

    • COMPARE_GRAPH_ALGCOMP

      public static final String COMPARE_GRAPH_ALGCOMP
      Constant COMPARE_GRAPH_ALGCOMP="compareGraphAlgcomp"
      See Also:

    • MIN_SAMPLE_SIZE_PER_CELL

      public static final String MIN_SAMPLE_SIZE_PER_CELL
      Constant MIN_SAMPLE_SIZE_PER_CELL="minSampleSizePerCell"
      See Also:

    • MIN_PARAM_SAMPLE_SIZE

      public static final String MIN_PARAM_SAMPLE_SIZE
      Constant MIN_PARAM_SAMPLE_SIZE="minParamSampleSize"
      See Also:

    • MAX_SCORE_DROP

      public static final String MAX_SCORE_DROP
      Constant MAX_SCORE_DROP="maxScoreDrop"
      See Also:

    • GUARANTEE_PAG

      public static final String GUARANTEE_PAG
      Constant GUARANTEE_PAG="guaranteePag"
      See Also:

    • REMOVE_ALMOST_CYCLES

      public static final String REMOVE_ALMOST_CYCLES
      Constant REMOVE_ALMOST_CYCLES="removeAlmostCycles"
      See Also:

    • PRESERVE_MARKOV

      public static final String PRESERVE_MARKOV
      Constant PRESERVE_MARKOV="preserveMarkov"
      See Also:

    • AM_TAYLOR_SERIES_DEGREE

      public static final String AM_TAYLOR_SERIES_DEGREE
      Constant AM_TAYLOR_SERIES_DEGREE="amTaylorSeriesDegree"
      See Also:

    • AM_RESCALE_MIN

      public static final String AM_RESCALE_MIN
      Constant AM_RESCALE_MIN="amRescaleMin"
      See Also:

    • AM_RESCALE_MAX

      public static final String AM_RESCALE_MAX
      Constant AM_RESCALE_MAX="amRescaleMax"
      See Also:

    • AM_BETA_ALPHA

      public static final String AM_BETA_ALPHA
      Constant AM_BETA_ALPHA="amBetaAlpha"
      See Also:

    • AM_BETA_BETA

      public static final String AM_BETA_BETA
      Constant AM_BETA_BETA="amBetaBeta"
      See Also:

    • AM_DERIVATIVE_MIN

      public static final String AM_DERIVATIVE_MIN
      Constant AM_DERIVATIVE_MIN="amDerivativeMin"
      See Also:

    • AM_DERIVATIVE_MAX

      public static final String AM_DERIVATIVE_MAX
      Constant AM_DERIVATIVE_MAX="amDerivativeMax"
      See Also:

    • AM_FIRST_DERIVATIVE_MIN

      public static final String AM_FIRST_DERIVATIVE_MIN
      Constant AM_FIRST_DERIVATIVE_MIN="amFirstDerivMin"
      See Also:

    • AM_FIRST_DERIVATIVE_MAX

      public static final String AM_FIRST_DERIVATIVE_MAX
      Constant AM_FIRST_DERIVATIVE_MAX="amFirstDerivMax"
      See Also:

    • AM_DISTORTION_TYPE

      public static final String AM_DISTORTION_TYPE
      Constant AM_DISTORT_PRE_ERROR="amDistortPreError"
      See Also:

    • DISTORT_PRE_NOISE

      public static final String DISTORT_PRE_NOISE
      /** Constant AM_DISTORT_PRE_ERROR="amDistortPreError"
      See Also:

    • DISTORT_POST_NONLINEAR

      public static final String DISTORT_POST_NONLINEAR
      Constant AM_DISTORT_POST_ERROR="amdistortPostNoise"
      See Also:

    • AM_COEF_HIGH

      public static final String AM_COEF_HIGH
      Constant AM_COEF_HIGH="amCoefHigh"
      See Also:

    • AM_COEF_LOW

      public static final String AM_COEF_LOW
      Constant AM_COEF_LOW="amCoefLow"
      See Also:

    • AM_COEF_SYMMETRIC

      public static final String AM_COEF_SYMMETRIC
      Constant AM_COEF_SYMMETRIC="amCoefSymmetric"
      See Also:

    • AM_ENSURE_INVERTIBILITY

      public static final String AM_ENSURE_INVERTIBILITY
      Constant AM_ENSURE_INVERTIBILITY="amEnsureInvertibility"
      See Also:

    • MAX_BLOCKING_PATH_LENGTH

      public static final String MAX_BLOCKING_PATH_LENGTH
      Constant MAX_BLOCKING_PATH_LENGTH="maxBlockingPathLength"
      See Also:

    • MAX_SEPSET_SIZE

      public static final String MAX_SEPSET_SIZE
      Constant MAX_SEPSET_SIZE="maxSepsetSize"
      See Also:

    • MNAR_NUM_EXTRA_INFLUENCES

      public static final String MNAR_NUM_EXTRA_INFLUENCES
      Constant MNAR_NUM_EXTRA_INFLUENCES="mnarNumExtraInfluences"
      See Also:

    • MNAR_THRESHOLD

      public static final String MNAR_THRESHOLD
      Constant MNAR_THRESHOLD="mnarThreshold"
      See Also:

    • MNAR_NUM_VARIABLES_WITH_MISSING

      public static final String MNAR_NUM_VARIABLES_WITH_MISSING
      Constant MNAR_NUM_VARIABLES_WITH_MISSING="mnarNumVariablesWithMissing"
      See Also:

    • HIDDEN_DIMENSION

      public static final String HIDDEN_DIMENSION
      Constant HIDDEN_DIMENSION="hiddenDimension"
      See Also:

    • HIDDEN_DIMENSIONS

      public static final String HIDDEN_DIMENSIONS
      Constant HIDDEN_DIMENSION="hiddenDimension"
      See Also:

    • INPUT_SCALE

      public static final String INPUT_SCALE
      Constant INPUT_SCALE="inputScale"
      See Also:

    • START_FROM_COMPLETE_GRAPH

      public static final String START_FROM_COMPLETE_GRAPH
      Constant START_FROM_COMPLETE_GRAPH="startFromCompleteGraph"
      See Also:

    • INCLUDE_ALL_NODES

      public static final String INCLUDE_ALL_NODES
      Constant INCLUDE_ALL_NODES="includeAllNodes"
      See Also:

    • DO_ONE_EQUATION_ONLY

      public static final String DO_ONE_EQUATION_ONLY
      Constant DO_ONE_EQUATION_ONLY="doOneEquationOnly"
      See Also:

    • MIMBUILD_TYPE

      public static final String MIMBUILD_TYPE
      Constant MIMBUILD_TYPE="mimbuildType"
      See Also:

    • EFFECTIVE_SAMPLE_SIZE

      public static final String EFFECTIVE_SAMPLE_SIZE
      Constant EFFECTIVE_SAMPLE_SIZE="effectiveSampleSize"
      See Also:

    • CLUSTER_SIZES

      public static final String CLUSTER_SIZES
      Constant CLUSTER_SIZES="clusterSizes"
      See Also:

    • TSC_MODE

      public static final String TSC_MODE
      Constant TSC_MODE="tscMode"
      See Also:

    • TSC_CLUSTER_SIZE

      public static final String TSC_CLUSTER_SIZE
      Constant TSC_CLUSTER_SIZE="tscClusterSize"
      See Also:

    • TSC_CLUSTER_RANK

      public static final String TSC_CLUSTER_RANK
      Constant TSC_CLUSTER_RANK="tscClusterRank"
      See Also:

    • TSC_PC_USE_BOSS

      public static final String TSC_PC_USE_BOSS
      Constant TSC_PC_USE_BOSS="tscPcUseBoss"
      See Also:

    • TSC_SINGLETON_POLICY

      public static final String TSC_SINGLETON_POLICY
      Constant TSC_SINGLETON_POLICY="tscSingletonPolicy"
      See Also:

    • TSC_ENABLE_HIERARCHY

      public static final String TSC_ENABLE_HIERARCHY
      Constant TSC_ENABLE_HIERARCHY="tscEnableHierarchy"
      See Also:

    • TSC_MIN_RANK_DROP

      public static final String TSC_MIN_RANK_DROP
      Constant TSC_MIN_RANK_DROP="tscMinRankDrop"
      See Also:

    • TSC_MIN_REDUNDANCY

      public static final String TSC_MIN_REDUNDANCY
      Constant TSC_MIN_REDUNDANCY="tscMinRedundancy"
      See Also:

    • MAX_RANK

      public static final String MAX_RANK
      Constant GFFC_R_MAX="gffc_r_max"
      See Also:

    • ALLOW_BIDIRECTED

      public static final String ALLOW_BIDIRECTED
      Constant ALLOW_BIDIRECTED="allowBidirected"
      See Also:

    • COLLIDER_ORIENTATION_STYLE

      public static final String COLLIDER_ORIENTATION_STYLE
      Constant COLLIDER_ORIENTATION_STYLE="colliderOrientationStyle"
      See Also:

    • CYCLIC_COEF_LOW

      public static final String CYCLIC_COEF_LOW
      Constant CYCLIC_COEF_LOW="cyclicCoefLow"
      See Also:

    • CYCLIC_COEF_HIGH

      public static final String CYCLIC_COEF_HIGH
      Constant CYCLIC_COEF_HIGH="cyclicCoefHigh"
      See Also:

    • CYCLIC_RADIUS

      public static final String CYCLIC_RADIUS
      Constant CYCLIC_RADIUS="cyclicRadius"
      See Also:

    • CYCLIC_MAX_PROD

      public static final String CYCLIC_MAX_PROD
      Constant CYCLIC_MAX_PROD="cyclicMaxProd"
      See Also:

    • CYCLIC_COEF_STYLE

      public static final String CYCLIC_COEF_STYLE
      Constant CYCLIC_COEF_STYLE="cyclicCoefStyle"
      See Also:

    • FDR_Q

      public static final String FDR_Q
      Constant FDR_Q="fdrQ"
      See Also:

    • GIN_BACKEND

      public static final String GIN_BACKEND
      Constant GIN_BACKEND="ginBackend"
      See Also:

    • GIN_PERMUTATIONS

      public static final String GIN_PERMUTATIONS
      Constant GIN_PERMUTATIONS="ginPermutations"
      See Also:

    • GIN_RIDGE

      public static final String GIN_RIDGE
      Constant GIN_RIDGE="ginRidge"
      See Also:

    • ANM_PRESET

      public static final String ANM_PRESET
      Constant ANM_PRESET="anmPreset"
      See Also:

    • ANM_NONLINEARITY

      public static final String ANM_NONLINEARITY
      Constant ANM_NONLINEARITY="anmNonlinearity"
      See Also:

    • ANM_NOISE_KIND

      public static final String ANM_NOISE_KIND
      Constant ANM_NOISE_KIND="anmNoiseKind"
      See Also:

    • ANM_NOISE_STRENGTH

      public static final String ANM_NOISE_STRENGTH
      Constant ANM_NOISE_STRENGTH="anmNoiseStrength"
      See Also:

    • INSTANCE_ROW

      public static final String INSTANCE_ROW
      Constant INSTANCE_ROW="instanceRow"
      See Also:

    • INSTANCE_SPECIFIC_ALPHA

      public static final String INSTANCE_SPECIFIC_ALPHA
      Constant IS_ALPHA="isAlpha"
      See Also:

    • FCIT_STARTS_WITH

      public static String FCIT_STARTS_WITH
      Constant FCIT_STARTS_WITH="fcitStartsWith"

    • EXTRA_EDGE_REMOVAL_STEP

      public static String EXTRA_EDGE_REMOVAL_STEP
      Constant EXTRA_EDGE_REMOVAL_STEP="extraEdgeRemovalStep"

    • MIN_COUNT_PER_CELL

      public static String MIN_COUNT_PER_CELL
      Constant MIN_COUNT_PER_CELL="minCountPerCell"

    • CELL_TABLE_TYPE

      public static String CELL_TABLE_TYPE
      Constant CELL_COUNT_TYPE="cellCountType"

    • MC_ALPHA

      public static String MC_ALPHA
      Constant CELL_COUNT_TYPE="cellCountType"

    • RCIT_MODE

      public static String RCIT_MODE
      Constant RCIT_MODE="rcit.rcitMode" Whether to use RCIT (true) or RCoT (false).

    • RCIT_NUM_FEATURES_Z

      public static String RCIT_NUM_FEATURES_Z
      Constant RCIT_NUM_FEATURES_Z="rcit.numFeaturesZ" Number of random Fourier features for the conditioning set Z (num_f).

    • RCIT_NUM_FEATURES_XY

      public static String RCIT_NUM_FEATURES_XY
      Constant RCIT_NUM_FEATURES_XY="rcit.numFeaturesXY" Number of random Fourier features for the test variables X and Y (num_f2).

    • RCIT_LAMBDA

      public static String RCIT_LAMBDA
      Constant RCIT_LAMBDA="rcit.lambda" Ridge regularization parameter (λ) used during residualization.

    • RCIT_APPROX

      public static String RCIT_APPROX
      Constant RCIT_APPROX="rcit.approx" Approximation method for the null distribution: one of {"lpd4", "hbe", "gamma", "chi2", "perm"}.

    • RCIT_PERMUTATIONS

      public static String RCIT_PERMUTATIONS
      Constant RCIT_PERMUTATIONS="rcit.permutations" Number of permutations used when RCIT_APPROX is "perm".

    • RCIT_CENTER_FEATURES

      public static String RCIT_CENTER_FEATURES
      Constant RCIT_CENTER_FEATURES="rcit.centerFeatures" Whether to center feature matrices before regression and HSIC.

    • TIME_LAG_REPLICATING_GRAPH

      public static String TIME_LAG_REPLICATING_GRAPH
      Constant REPEATING_GRAPH="repeatingGraph" Whether to use a repeating graph for time lag search.

  • Method Details

    • getAlgorithmParameters

      public static Set<String> getAlgorithmParameters(Algorithm algorithm)

      getAlgorithmParameters.

      Parameters:
      algorithm - a Algorithm object
      Returns:
      a Set object

    • getTestParameters

      public static Set<String> getTestParameters(Algorithm algorithm)

      getTestParameters.

      Parameters:
      algorithm - a Algorithm object
      Returns:
      a Set object

    • getScoreParameters

      public static Set<String> getScoreParameters(Algorithm algorithm)

      getScoreParameters.

      Parameters:
      algorithm - a Algorithm object
      Returns:
      a Set object

    • getBootstrappingParameters

      public static Set<String> getBootstrappingParameters(Algorithm algorithm)

      getBootstrappingParameters.

      Parameters:
      algorithm - a Algorithm object
      Returns:
      a Set object

    • getParameters

      public static Set<String> getParameters()

      getParameters.

      Returns:
      a Set object