Package edu.cmu.tetrad.search

Class MimbuildTrek

java.lang.Object
edu.cmu.tetrad.search.MimbuildTrek
@Deprecated(since="7.9", forRemoval=false) public class MimbuildTrek extends Object
Deprecated.
Implements Mimbuild using the theory of treks and ranks.

This class is configured to respect knowledge of forbidden and required edges, including knowledge of temporal tiers.

Version:
$Id: $Id
Author:
adambrodie
See Also:

  • Constructor Details

    • MimbuildTrek

      public MimbuildTrek()
      Deprecated.
      Empty constructor.

  • Method Details

    • search

      public Graph search(List<List<Node>> clustering, List<String> latentNames, ICovarianceMatrix measuresCov) throws InterruptedException
      Deprecated.
      Does the search and returns the graph.
      Parameters:
      clustering - A clustering of the variables, each of which is explained by a single latent.
      latentNames - The names of the latents, which cannot be known by the clustering algorithm.
      measuresCov - The covariance matrix over the measured variables, from the data.
      Returns:
      A graph over the latents.
      Throws:
      InterruptedException - If the search is interrupted.

    • getClustering

      public List<List<Node>> getClustering()
      Deprecated.
      The clustering used.
      Returns:
      This clustering.

    • setAlpha

      public void setAlpha(double alpha)
      Deprecated.
      The alpha to use.
      Parameters:
      alpha - This alpha.

    • setKnowledge

      public void setKnowledge(Knowledge knowledge)
      Deprecated.
      The knowledge to use in the search.
      Parameters:
      knowledge - This knowledge.

    • getLatentsCov

      public ICovarianceMatrix getLatentsCov()
      Deprecated.
      The covariance matrix over the latents that is implied by the clustering.
      Returns:
      This covariance matrix.

    • getpValue

      public double getpValue()
      Deprecated.
      The p-value of the model.
      Returns:
      This p-value.

    • getFullGraph

      public Graph getFullGraph()
      Deprecated.
      The full graph discovered.
      Returns:
      the allowUnfaithfulness discovered graph, with latents and indicators.

    • setEpsilon

      public void setEpsilon(double epsilon)
      Deprecated.
      Sets the parameter convergence threshold. Default = 1e-4.
      Parameters:
      epsilon - This threshold.

    • getMinClusterSize

      public int getMinClusterSize()
      Deprecated.
      Clusters smaller than this size will be tossed out.
      Returns:
      a int

    • setMinClusterSize

      public void setMinClusterSize(int minClusterSize)
      Deprecated.
      Sets the minimum cluster size.
      Parameters:
      minClusterSize - The minimum cluster size to be set.
      Throws:
      IllegalArgumentException - If the minimum cluster size is less than 3.