Package edu.cmu.tetrad.algcomparison.algorithm.multi

Class FgesConcatenated

java.lang.Object
edu.cmu.tetrad.algcomparison.algorithm.multi.FgesConcatenated
All Implemented Interfaces:
Algorithm, MultiDataSetAlgorithm, HasKnowledge, HasParameters, TetradSerializable, Serializable
@Bootstrapping public class FgesConcatenated extends Object implements MultiDataSetAlgorithm, HasKnowledge
Requires that the parameter 'randomSelectionSize' be set to indicate how many datasets should be taken at a time (randomly). This cannot given multiple values.
Version:
$Id: $Id
Author:
josephramsey
See Also:

  • Constructor Details

    • FgesConcatenated

      public FgesConcatenated(ScoreWrapper score)

      Constructor for FgesConcatenated.

      Parameters:
      score - a ScoreWrapper object

    • FgesConcatenated

      public FgesConcatenated(ScoreWrapper score, boolean compareToTrue)

      Constructor for FgesConcatenated.

      Parameters:
      score - a ScoreWrapper object
      compareToTrue - a boolean

    • FgesConcatenated

      public FgesConcatenated(ScoreWrapper score, Algorithm externalGraph)

      Constructor for FgesConcatenated.

      Parameters:
      score - a ScoreWrapper object
      externalGraph - a Algorithm object

  • Method Details

    • search

      public Graph search(List<DataModel> dataModels, Parameters parameters) throws InterruptedException
      Runs the search.
      Specified by:
      search in interface MultiDataSetAlgorithm
      Parameters:
      dataModels - The data sets.
      parameters - The parameters.
      Returns:
      The graph.
      Throws:
      InterruptedException - if any.

    • setScoreWrapper

      public void setScoreWrapper(ScoreWrapper score)
      Sets a score wrapper if not null.
      Specified by:
      setScoreWrapper in interface MultiDataSetAlgorithm
      Parameters:
      score - The wrapper

    • setIndTestWrapper

      public void setIndTestWrapper(IndependenceWrapper test)
      Sets a test wrapper if not null.
      Specified by:
      setIndTestWrapper in interface MultiDataSetAlgorithm
      Parameters:
      test - The wrapper

    • search

      public Graph search(DataModel dataSet, Parameters parameters) throws InterruptedException
      Runs the search.
      Specified by:
      search in interface Algorithm
      Parameters:
      dataSet - The data set to run to the search on.
      parameters - The paramters of the search.
      Returns:
      The result graph.
      Throws:
      InterruptedException - if any.

    • getComparisonGraph

      public Graph getComparisonGraph(Graph graph)
      Returns that graph that the result should be compared to.
      Specified by:
      getComparisonGraph in interface Algorithm
      Parameters:
      graph - The true directed graph, if there is one.
      Returns:
      The comparison graph.

    • getDescription

      public String getDescription()
      Returns a short, one-line description of this algorithm. This will be printed in the report.
      Specified by:
      getDescription in interface Algorithm
      Returns:
      This description.

    • getDataType

      public DataType getDataType()
      Returns the data type that the search requires, whether continuous, discrete, or mixed.
      Specified by:
      getDataType in interface Algorithm
      Returns:
      This type.

    • getParameters

      public List<String> getParameters()
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not
      Specified by:
      getParameters in interface HasParameters
      Returns:
      Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not already defined they'll need to be defined there.

    • getKnowledge

      public Knowledge getKnowledge()
      Returns a knowledge object.
      Specified by:
      getKnowledge in interface HasKnowledge
      Returns:
      a knowledge object.

    • setKnowledge

      public void setKnowledge(Knowledge knowledge)
      Sets a knowledge object.
      Specified by:
      setKnowledge in interface HasKnowledge
      Parameters:
      knowledge - a knowledge object.

    • setCompareToTrue

      public void setCompareToTrue(boolean compareToTrue)

      Setter for the field compareToTrue.

      Parameters:
      compareToTrue - true if the result should be compared to the true graph, false if to the CPDAG of the true graph.