Package edu.cmu.tetrad.algcomparison.algorithm.multi

Class FciIod

java.lang.Object

edu.cmu.tetrad.algcomparison.algorithm.multi.FciIod

All Implemented Interfaces:

Algorithm, MultiDataSetAlgorithm, HasKnowledge, HasParameters, TakesIndependenceWrapper, TetradSerializable, Serializable

@Algorithm(name="FCI-IOD",
           command="fci-iod",
           algoType=forbid_latent_common_causes,
           dataType=All)
public class FciIod
extends Object
implements MultiDataSetAlgorithm, HasKnowledge, TakesIndependenceWrapper

Runs FCI on multiple datasets using the IOD pooled dataset independence test. The reference is here:

Tillman, R., & Spirtes, P. (2011, June). Learning equivalence classes of acyclic models with latent and selection variables from multiple datasets with overlapping variables. In Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics (pp. 3-15). JMLR Workshop and Conference Proceedings.

Version:

$Id: $Id

Author:

josephramsey

See Also:

• IndTestIod
• Serialized Form

Constructor Summary

Constructors

Constructor	Description
FciIod()	Constructor for FciIod.
FciIod(IndependenceWrapper test)	Constructor for FciIod.

Method Summary

Modifier and Type	Method	Description
Graph	getComparisonGraph(Graph graph)	Returns that graph that the result should be compared to.
DataType	getDataType()	Returns the data type that the search requires, whether continuous, discrete, or mixed.
String	getDescription()	Returns a short, one-line description of this algorithm.
IndependenceWrapper	getIndependenceWrapper()	Returns the independence wrapper.
Knowledge	getKnowledge()	Returns a knowledge object.
List<String>	getParameters()	Returns the list of parameter names that are used.
Graph	search(DataModel dataSet, Parameters parameters)	Runs the search.
Graph	search(List<DataModel> dataSets, Parameters parameters)	Runs the search.
void	setIndependenceWrapper(IndependenceWrapper test)	Sets the independence wrapper.
void	setIndTestWrapper(IndependenceWrapper test)	Sets a test wrapper if not null.
void	setKnowledge(Knowledge knowledge)	Sets a knowledge object.
void	setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FciIod

public FciIod(IndependenceWrapper test)

Constructor for FciIod.

Parameters:

test - a IndependenceWrapper object

FciIod

public FciIod()

Constructor for FciIod.

Method Details

search

public Graph search(List<DataModel> dataSets,
 Parameters parameters)
             throws InterruptedException

Runs the search.

Specified by:

search in interface MultiDataSetAlgorithm

Parameters:

dataSets - The data sets.

parameters - The parameters.

Returns:

The graph.

Throws:

InterruptedException - if any.

setScoreWrapper

public void setScoreWrapper(ScoreWrapper score)

Sets a score wrapper if not null.

Specified by:

setScoreWrapper in interface MultiDataSetAlgorithm

Parameters:

score - The wrapper

setIndTestWrapper

public void setIndTestWrapper(IndependenceWrapper test)

Sets a test wrapper if not null.

Specified by:

setIndTestWrapper in interface MultiDataSetAlgorithm

Parameters:

test - The wrapper

search

public Graph search(DataModel dataSet,
 Parameters parameters)
             throws InterruptedException

Runs the search.

Specified by:

search in interface Algorithm

Parameters:

dataSet - The data set to run to the search on.

parameters - The paramters of the search.

Returns:

The result graph.

Throws:

InterruptedException - if any.

getComparisonGraph

public Graph getComparisonGraph(Graph graph)

Returns that graph that the result should be compared to.

Specified by:

getComparisonGraph in interface Algorithm

Parameters:

graph - The true directed graph, if there is one.

Returns:

The comparison graph.

getDescription

public String getDescription()

Returns a short, one-line description of this algorithm. This will be printed in the report.

Specified by:

getDescription in interface Algorithm

Returns:

This description.

getDataType

public DataType getDataType()

Returns the data type that the search requires, whether continuous, discrete, or mixed.

Specified by:

getDataType in interface Algorithm

Returns:

This type.

getParameters

public List<String> getParameters()

Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not

Specified by:

getParameters in interface HasParameters

Returns:

Returns the list of parameter names that are used. These are looked up in ParamMap, so if they're not already defined they'll need to be defined there.

getKnowledge

public Knowledge getKnowledge()

Returns a knowledge object.

Specified by:

getKnowledge in interface HasKnowledge

Returns:

a knowledge object.

setKnowledge

public void setKnowledge(Knowledge knowledge)

Sets a knowledge object.

Specified by:

setKnowledge in interface HasKnowledge

Parameters:

knowledge - a knowledge object.

getIndependenceWrapper

public IndependenceWrapper getIndependenceWrapper()

Returns the independence wrapper.

Specified by:

getIndependenceWrapper in interface TakesIndependenceWrapper

Returns:

the independence wrapper.

setIndependenceWrapper

public void setIndependenceWrapper(IndependenceWrapper test)

Sets the independence wrapper.

Specified by:

setIndependenceWrapper in interface TakesIndependenceWrapper

Parameters:

test - the independence wrapper.