Uses of Interface
edu.cmu.tetrad.algcomparison.score.ScoreWrapper

Packages that use ScoreWrapper

Package	Description
edu.cmu.tetrad.algcomparison.algorithm
edu.cmu.tetrad.algcomparison.algorithm.continuous.dag
edu.cmu.tetrad.algcomparison.algorithm.multi
edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag
edu.cmu.tetrad.algcomparison.algorithm.oracle.pag
edu.cmu.tetrad.algcomparison.score
edu.cmu.tetrad.algcomparison.utils
edu.cmu.tetrad.search	Contains classes for searching for (mostly structural) causal models given data.
edu.cmu.tetrad.search.work_in_progress	Contains some classes that aren't ready for prime time.
edu.pitt.dbmi.algo.resampling
edu.pitt.dbmi.algo.resampling.task

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm

Methods in edu.cmu.tetrad.algcomparison.algorithm with parameters of type ScoreWrapper

Modifier and Type	Method	Description
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score)	Creates an algorithm.
static Algorithm	AlgorithmFactory.create(Class<? extends Algorithm> algoClass, IndependenceWrapper test, ScoreWrapper score, Graph externalGraph)	Creates an algorithm.
void	MultiDataSetAlgorithm.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	DirectLingam.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	DirectLingam.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.continuous.dag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	DirectLingam(ScoreWrapper score)	Constructor for DirectLingam.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.multi

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	Fask.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	FaskVote.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Images.getScoreWrapper()	Retrieves the score wrapper associated with this instance.
ScoreWrapper	ImagesBoss.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	Fask.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	FaskConcatenated.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FaskLofsConcatenated.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FaskVote.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FciIod.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	FgesConcatenated.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.
void	Images.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper associated with this instance.
void	ImagesBoss.setScoreWrapper(ScoreWrapper score)	Sets a score wrapper if not null.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.multi with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Fask(IndependenceWrapper test, ScoreWrapper score)	Constructor for Fask.
	FaskConcatenated(ScoreWrapper score, IndependenceWrapper test)	Constructor for FaskConcatenated.
	FaskVote(IndependenceWrapper test, ScoreWrapper score)	Constructor for FaskVote.
	FaskVote(ScoreWrapper score)	Constructor for FaskVote.
	FgesConcatenated(ScoreWrapper score)	Constructor for FgesConcatenated.
	FgesConcatenated(ScoreWrapper score, boolean compareToTrue)	Constructor for FgesConcatenated.
	FgesConcatenated(ScoreWrapper score, Algorithm externalGraph)	Constructor for FgesConcatenated.
	Images(ScoreWrapper score)	Constructor for Images.
	ImagesBoss(ScoreWrapper score)	Constructor for ImagesBoss.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	Boss.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	BossLingam.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Cstar.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Fges.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	FgesMb.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Grasp.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	RestrictedBoss.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Sp.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	Boss.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	BossLingam.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Cstar.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Fges.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	FgesMb.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Grasp.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	RestrictedBoss.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Sp.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Boss(ScoreWrapper score)	Constructs a new BOSS algorithm with the given score.
	BossLingam(ScoreWrapper scoreWrapper)	Constructs a new BOSS-LiNGAM algorithm with the given score.
	Cstar(IndependenceWrapper test, ScoreWrapper score)	Constructor for Cstar.
	Fges(ScoreWrapper score)	Constructor for Fges.
	FgesMb(ScoreWrapper score)	Constructor for FgesMb.
	FgesMeasurement(ScoreWrapper score)	Constructor for FgesMeasurement.
	Grasp(IndependenceWrapper test, ScoreWrapper score)	Constructor for Grasp.
	RestrictedBoss(ScoreWrapper score)	Constructor for RestrictedBoss.
	Sp(ScoreWrapper score)	Constructor for Sp.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	Bfci.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	Gfci.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	GraspFci.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	SpFci.getScoreWrapper()	Returns the score wrapper.
ScoreWrapper	SvarGfci.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	Bfci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	Gfci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	GraspFci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	SpFci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.
void	SvarGfci.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Constructors in edu.cmu.tetrad.algcomparison.algorithm.oracle.pag with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Bfci(IndependenceWrapper test, ScoreWrapper score)	Constructs a new BFCI algorithm using the given test and score.
	Gfci(IndependenceWrapper test, ScoreWrapper score)	Constructor for Gfci.
	GraspFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for GraspFci.
	SpFci(IndependenceWrapper test, ScoreWrapper score)	Constructor for SpFci.
	SvarGfci(IndependenceWrapper type, ScoreWrapper score)	Constructor for SvarGfci.

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.score

Classes in edu.cmu.tetrad.algcomparison.score that implement ScoreWrapper

Modifier and Type	Class	Description
class	BdeuScore	Wrapper for Fisher Z test.
class	ConditionalGaussianBicScore	Wrapper for Fisher Z test.
class	DegenerateGaussianBicScore	Wrapper for degenerate Gaussian BIC score
class	DiscreteBicScore	Wrapper for Discrete BIC test.
class	EbicScore	Wrapper for linear, Gaussian Extended BIC score (Chen and Chen).
class	FisherZScore	Wrapper for Fisher Z test.
class	GicScores	Wrapper for linear, Gaussian Extended BIC score (Chen and Chen).
class	MagSemBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	MSeparationScore	Wrapper for Fisher Z test.
class	MVPBicScore	Wrapper for MVP BIC Score.
class	PoissonPriorScore	Wrapper for the Poisson prior score (Bryan)
class	PositiveCorrScore	Wrapper for Fisher Z test.
class	SemBicScore	Wrapper for linear, Gaussian SEM BIC score.
class	SemBicScoreDeterministic	Wrapper for Fisher Z test.
class	ZhangShenBoundScore	Wrapper for linear, Gaussian Extended BIC score (Chen and Chen).

Uses of ScoreWrapper in edu.cmu.tetrad.algcomparison.utils

Methods in edu.cmu.tetrad.algcomparison.utils that return ScoreWrapper

Modifier and Type	Method	Description
ScoreWrapper	UsesScoreWrapper.getScoreWrapper()	Returns the score wrapper.

Methods in edu.cmu.tetrad.algcomparison.utils with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	UsesScoreWrapper.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper.

Uses of ScoreWrapper in edu.cmu.tetrad.search

Constructors in edu.cmu.tetrad.search with parameters of type ScoreWrapper

Modifier	Constructor	Description
	Cstar(IndependenceWrapper test, ScoreWrapper score, Parameters parameters)	Constructor.

Uses of ScoreWrapper in edu.cmu.tetrad.search.work_in_progress

Constructors in edu.cmu.tetrad.search.work_in_progress with parameters of type ScoreWrapper

Modifier	Constructor	Description
	FaskVote(List<DataSet> dataSets, ScoreWrapper score, IndependenceWrapper test)	Constructor.

Uses of ScoreWrapper in edu.pitt.dbmi.algo.resampling

Methods in edu.pitt.dbmi.algo.resampling with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	GeneralResamplingSearch.setScoreWrapper(ScoreWrapper scoreWrapper)	Sets the score wrapper to pass to multi-data set algorithms.
void	GeneralResamplingTest.setScoreWrapper(ScoreWrapper score)	Sets the score wrapper if not null.

Uses of ScoreWrapper in edu.pitt.dbmi.algo.resampling.task

Methods in edu.pitt.dbmi.algo.resampling.task with parameters of type ScoreWrapper

Modifier and Type	Method	Description
void	GeneralResamplingSearchRunnable.setScoreWrapper(ScoreWrapper scoreWrapper)	Sets the score wrapper, for multi-data set algorithms.