Package edu.cmu.tetrad.search.work_in_progress

Class IndTestMixedMultipleTTest

java.lang.Object

edu.cmu.tetrad.search.work_in_progress.IndTestMixedMultipleTTest

All Implemented Interfaces:

IndependenceTest

public class IndTestMixedMultipleTTest
extends Object
implements IndependenceTest

Performs a test of conditional independence X _||_ Y | Z1...Zn where all searchVariables are either continuous or discrete. This test is valid for both ordinal and non-ordinal discrete searchVariables.

This logisticRegression makes multiple assumptions: 1. IIA 2. Large sample size (multiple regressions needed on subsets of sample)

Author:

josephramsey, Augustus Mayo.

Constructor Summary

Constructors

Constructor	Description
IndTestMixedMultipleTTest(DataSet data, double alpha)

Method Summary

Modifier and Type	Method	Description
IndependenceResult	checkIndependence(Node x, Node y, Set<Node> z)
boolean	determines(List<Node> z, Node y)
double	getAlpha()	Returns the significance level of the independence test.
DataSet	getData()	Returne the original data for the method.
double	getPValue()
List<Node>	getVariables()
IndependenceTest	indTestSubset(List<Node> vars)	Returns an Independence test for a sublist of the variables.
boolean	isVerbose()	Returns whether verbose output should be printed.
void	setAlpha(double alpha)	Sets the significance level.
void	setPreferLinear(boolean preferLinear)
void	setVerbose(boolean verbose)	Sets whether verbose output should be printed.
String	toString()	Returns a string representation of this test.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.cmu.tetrad.search.IndependenceTest

checkIndependence, determines, getCov, getDataSets, getSampleSize, getVariable, getVariableNames

Constructor Details

IndTestMixedMultipleTTest

public IndTestMixedMultipleTTest(DataSet data,
 double alpha)

Method Details

setPreferLinear

public void setPreferLinear(boolean preferLinear)

indTestSubset

public IndependenceTest indTestSubset(List<Node> vars)

Description copied from interface: IndependenceTest

Returns an Independence test for a sublist of the variables.

Specified by:

indTestSubset in interface IndependenceTest

Parameters:

vars - The sublist of variables.

Returns:

an Independence test for a subset of the searchVariables.

checkIndependence

public IndependenceResult checkIndependence(Node x,
 Node y,
 Set<Node> z)

Specified by:

checkIndependence in interface IndependenceTest

Returns:

True if the given independence question is judged true, False if not. The independence question is of the form x _||_ y | z, z = [z1,...,zn], where x, y, z1,...,zn are searchVariables in the list returned by getVariableNames().

See Also:

• IndependenceResult

getPValue

public double getPValue()

Returns:

the probability associated with the most recently executed independence test, of Double.NaN if p value is not meaningful for tis test.

getVariables

public List<Node> getVariables()

Specified by:

getVariables in interface IndependenceTest

Returns:

the list of searchVariables over which this independence checker is capable of determinining independence relations.

determines

public boolean determines(List<Node> z,
 Node y)

Throws:

javax.help.UnsupportedOperationException - Method not implemented.

getAlpha

public double getAlpha()

Description copied from interface: IndependenceTest

Returns the significance level of the independence test.

Specified by:

getAlpha in interface IndependenceTest

Returns:

This level.

Throws:

UnsupportedOperationException - if there is no significance level.

setAlpha

public void setAlpha(double alpha)

Sets the significance level.

Specified by:

setAlpha in interface IndependenceTest

Parameters:

alpha - This level.

getData

public DataSet getData()

Returne the original data for the method.

Specified by:

getData in interface IndependenceTest

Returns:

This data.

See Also:

• DataSet
• ICovarianceMatrix
• DataModel

toString

public String toString()

Description copied from interface: IndependenceTest

Returns a string representation of this test.

Specified by:

toString in interface IndependenceTest

Overrides:

toString in class Object

Returns:

a string representation of this test.

isVerbose

public boolean isVerbose()

Returns whether verbose output should be printed.

Specified by:

isVerbose in interface IndependenceTest

Returns:

This.

setVerbose

public void setVerbose(boolean verbose)

Sets whether verbose output should be printed.

Specified by:

setVerbose in interface IndependenceTest

Parameters:

verbose - True, if so.