Package edu.cmu.tetrad.search.utils
Class TeyssierScorer
java.lang.Object
edu.cmu.tetrad.search.utils.TeyssierScorer
Implements and extends a scorer extending Teyssier, M., and Koller, D. (2012). You give it a score function and a
variable ordering, and it computes the score. You can move any variable left or right, and it will keep track of the
score using the Teyssier and Kohler method. You can move a variable to a new position, and you can bookmark a state
and come back to it.
Teyssier, M., & Koller, D. (2012). Ordering-based search: A simple and effective algorithm for learning Bayesian networks. arXiv preprint arXiv:1207.1429.
- Author:
- josephramsey, bryanandrews
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Constructor Summary
ConstructorsConstructorDescriptionTeyssierScorer
(IndependenceTest test, Score score) Constructor that takes both a test or a score. -
Method Summary
Modifier and TypeMethodDescriptionboolean
Returns True iff a is adjacent to b in the current graph.void
bookmark()
Bookmarks the current pi with index Integer.MIN_VALUE.void
bookmark
(int key) Bookmarks the current pi as index key.void
Clears all bookmarks.boolean
True iff the nodes in W form a clique in the current DAG.boolean
Returns true iff [a, b, c] is a collider.boolean
coveredEdge
(Node x, Node y) Returns true iff x->y or y->x is a covered edge.get
(int j) Returns the node at index j in pi.Returns a list of adjacent node pairs in the current graph.Returns the nodes adjacent to v.getAncestors
(Node node) getChildren
(int p) Returns the children of a node v.getChildren
(Node v) Returns the children of a node v.getEdges()
Returns a list of edges for the current graph as a list of ordered pairs.getGraph
(boolean cpDag) Returns the DAG build for the current permutation, or its CPDAG.int
Returns the current permutation without making a copy.getParents
(int p) Returns the parents of the node at index p.getParents
(Node v) Returns the parents of a node v.getPi()
getPrefix
(int i) void
Retries the bookmark with key = Integer.MIN_VALUE and removes the bookmark.void
goToBookmark
(int key) Retrieves the bookmarked state for index 'key' and removes that bookmark.int
Return the index of v in the current permutation.void
Moves v to a new index.boolean
double
score()
double
Scores the given permutation.void
setKnowledge
(Knowledge knowledge) void
setUseRaskuttiUhler
(boolean useRaskuttiUhler) void
setUseScore
(boolean useScore) int
size()
boolean
Swaps m and n in the permutation.void
Performs a tuck operation.boolean
Returns true iff [a, b, c] is a triangle.boolean
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Constructor Details
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TeyssierScorer
Constructor that takes both a test or a score. Only one of these is used, dependeint on how the parameters are set.- Parameters:
test
- The test.score
- The score- See Also:
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Method Details
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setUseScore
public void setUseScore(boolean useScore) - Parameters:
useScore
- True if the score should be used; false if the test should be used.
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setKnowledge
- Parameters:
knowledge
- Knowledge of forbidden edges.
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setUseRaskuttiUhler
public void setUseRaskuttiUhler(boolean useRaskuttiUhler) - Parameters:
useRaskuttiUhler
- True if Pearl's method for building a DAG should be used.
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score
Scores the given permutation. This needs to be done initially before any move or tuck operations are performed.- Parameters:
order
- The permutation to score.- Returns:
- The score of it.
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score
public double score()- Returns:
- The score of the current permutation.
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swaptuck
Performs a tuck operation. -
tuck
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moveTo
Moves v to a new index.- Parameters:
v
- The variable to move.toIndex
- The index to move v to.
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swap
Swaps m and n in the permutation.- Parameters:
m
- The first variable.n
- The second variable.- Returns:
- True iff the swap was done.
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coveredEdge
Returns true iff x->y or y->x is a covered edge. x->y is a covered edge if parents(x) = parents(y) \ {x}- Parameters:
x
- The first variable.y
- The second variable.- Returns:
- True iff x->y or y->x is a covered edge.
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getPi
- Returns:
- A copy of the current permutation.
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getOrderShallow
Returns the current permutation without making a copy. Could be dangerous!- Returns:
- the current permutation.
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index
Return the index of v in the current permutation.- Parameters:
v
- The variable.- Returns:
- Its index.
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getParents
Returns the parents of the node at index p.- Parameters:
p
- The index of the node.- Returns:
- Its parents.
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getChildren
Returns the children of a node v.- Parameters:
p
- The index of the variable.- Returns:
- Its parents.
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getParents
Returns the parents of a node v.- Parameters:
v
- The variable.- Returns:
- Its parents.
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getChildren
Returns the children of a node v.- Parameters:
v
- The variable.- Returns:
- Its parents.
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getAdjacentNodes
Returns the nodes adjacent to v.- Parameters:
v
- The variable.- Returns:
- Its adjacent nodes.
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getGraph
Returns the DAG build for the current permutation, or its CPDAG.- Parameters:
cpDag
- True iff the CPDAG should be returned, False if the DAG.- Returns:
- This graph.
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getAdjacencies
Returns a list of adjacent node pairs in the current graph.- Returns:
- This list.
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getAncestors
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getEdges
Returns a list of edges for the current graph as a list of ordered pairs.- Returns:
- This list.
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getNumEdges
public int getNumEdges()- Returns:
- The number of edges in the current graph.
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get
Returns the node at index j in pi.- Parameters:
j
- The index.- Returns:
- The node at that index.
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bookmark
public void bookmark(int key) Bookmarks the current pi as index key.- Parameters:
key
- This bookmark may be retrieved using the index 'key', an integer. This bookmark will be stored until it is retrieved and then removed.
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bookmark
public void bookmark()Bookmarks the current pi with index Integer.MIN_VALUE. -
goToBookmark
public void goToBookmark(int key) Retrieves the bookmarked state for index 'key' and removes that bookmark.- Parameters:
key
- The integer key for this bookmark.
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goToBookmark
public void goToBookmark()Retries the bookmark with key = Integer.MIN_VALUE and removes the bookmark. -
clearBookmarks
public void clearBookmarks()Clears all bookmarks. -
size
public int size()- Returns:
- The size of pi, the current permutation.
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getShuffledVariables
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adjacent
Returns True iff a is adjacent to b in the current graph.- Parameters:
a
- The first node.b
- The second node.- Returns:
- True iff adj(a, b).
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collider
Returns true iff [a, b, c] is a collider.- Parameters:
a
- The first node.b
- The second node.c
- The third node.- Returns:
- True iff a->b<-c in the current DAG.
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triangle
Returns true iff [a, b, c] is a triangle.- Parameters:
a
- The first node.b
- The second node.c
- The third node.- Returns:
- True iff adj(a, b) and adj(b, c) and adj(a, c).
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clique
True iff the nodes in W form a clique in the current DAG.- Parameters:
W
- The nodes.- Returns:
- True iff these nodes form a clique.
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getPrefix
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getSkeleton
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parent
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