Package edu.cmu.tetrad.search

Class MagSemBicScore

java.lang.Object

edu.cmu.tetrad.search.MagSemBicScore

All Implemented Interfaces:

Score

public class MagSemBicScore
extends Object
implements Score

Author:

Bryan Andrews

Constructor Summary

Constructors

Constructor	Description
MagSemBicScore(DataSet dataSet)
MagSemBicScore(ICovarianceMatrix covariances)

Method Summary

Modifier and Type	Method	Description
boolean	determines(List<Node> z, Node y)
Graph	getMag()
int	getMaxDegree()
List<Node>	getOrder()
double	getPenaltyDiscount()
int	getSampleSize()
List<Node>	getVariables()
boolean	isEffectEdge(double bump)
double	localScore(int i, int... js)
double	localScoreDiff(int x, int y, int[] z)
void	resetMag()
void	resetOrder()
void	setMag(Graph mag)
void	setOrder(List<Node> order)
void	setPenaltyDiscount(double penaltyDiscount)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface edu.cmu.tetrad.search.Score

append, defaultScore, getVariable, localScore, localScore, localScoreDiff, toString

Constructor Details

MagSemBicScore

public MagSemBicScore(ICovarianceMatrix covariances)

MagSemBicScore

public MagSemBicScore(DataSet dataSet)

Method Details

getMag

public Graph getMag()

setMag

public void setMag(Graph mag)

resetMag

public void resetMag()

getOrder

public List<Node> getOrder()

setOrder

public void setOrder(List<Node> order)

resetOrder

public void resetOrder()

localScore

public double localScore(int i,
 int... js)

Specified by:

localScore in interface Score

Parameters:

i - The index of the node.

js - The indices of the node's parents.

Returns:

The score, or NaN if the score cannot be calculated.

getPenaltyDiscount

public double getPenaltyDiscount()

setPenaltyDiscount

public void setPenaltyDiscount(double penaltyDiscount)

localScoreDiff

public double localScoreDiff(int x,
 int y,
 int[] z)

Specified by:

localScoreDiff in interface Score

getSampleSize

public int getSampleSize()

Specified by:

getSampleSize in interface Score

getVariables

public List<Node> getVariables()

Specified by:

getVariables in interface Score

isEffectEdge

public boolean isEffectEdge(double bump)

Specified by:

isEffectEdge in interface Score

getMaxDegree

public int getMaxDegree()

Specified by:

getMaxDegree in interface Score

determines

public boolean determines(List<Node> z,
 Node y)

Specified by:

determines in interface Score