Uses of Interface
edu.cmu.tetrad.search.GraphSearch

Packages that use GraphSearch

Package	Description
edu.cmu.tetrad.search
edu.cmu.tetrad.search.mb
edu.pitt.csb.mgm
edu.pitt.dbmi.algo.bayesian.constraint.search

Uses of GraphSearch in edu.cmu.tetrad.search

Classes in edu.cmu.tetrad.search that implement GraphSearch

Modifier and Type	Class	Description
final class	BFci	J.M.
final class	BfciFoo	Does BOSS + retain unshielded colliders + final FCI orientation rules
final class	BfciTr	Does an FCI-style latent variable search using permutation-based reasoning.
final class	Bridges	GesSearch is an implementation of the GES algorithm, as specified in Chickering (2002) "Optimal structure identification with greedy search" Journal of Machine Learning Research.
final class	Bridges2	GesSearch is an implementation of the GES algorithm, as specified in Chickering (2002) "Optimal structure identification with greedy search" Journal of Machine Learning Research.
final class	Ccd	This class provides the data structures and methods for carrying out the Cyclic Causal Discovery algorithm (CCD) described by Thomas Richardson and Peter Spirtes in Chapter 7 of Computation, Causation, and Discovery by Glymour and Cooper eds.
final class	CcdMax	This is an optimization of the CCD (Cyclic Causal Discovery) algorithm by Thomas Richardson.
final class	Cfci	Extends Erin Korber's implementation of the Fast Causal Inference algorithm (found in FCI.java) with Jiji Zhang's Augmented FCI rules (found in sec.
final class	Cpc	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	CpcStable	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	Fask	Runs the FASK (Fast Adjacency Skewness) algorithm.
final class	FasLofs	Fast adjacency search followed by robust skew orientation.
final class	Fci	Extends Erin Korber's implementation of the Fast Causal Inference algorithm (found in FCI.java) with Jiji Zhang's Augmented FCI rules (found in sec.
final class	FciMax	Extends Erin Korber's implementation of the Fast Causal Inference algorithm (found in FCI.java) with Jiji Zhang's Augmented FCI rules (found in sec.
final class	Fges	GesSearch is an implementation of the GES algorithm, as specified in Chickering (2002) "Optimal structure identification with greedy search" Journal of Machine Learning Research.
final class	FgesOrienter	GesSearch is an implementation of the GES algorithm, as specified in Chickering (2002) "Optimal structure identification with greedy search" Journal of Machine Learning Research.
final class	GFci	J.M.
final class	GraspFci	J.M.
class	Kpc	Kernelized PC algorithm.
final class	LvSwap	Does BOSS2, followed by two swap rules, then final FCI orientation.
class	Pc	Implements the PC ("Peter/Clark") algorithm, as specified in Chapter 6 of Spirtes, Glymour, and Scheines, "Causation, Prediction, and Search," 2nd edition, with a modified rule set in step D due to Chris Meek.
final class	PcAll	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
class	Pcd	Implements the PC ("Peter/Clark") algorithm, as specified in Chapter 6 of Spirtes, Glymour, and Scheines, "Causation, Prediction, and Search," 2nd edition, with a modified rule set in step D due to Chris Meek.
class	PcLocal	Implements the PC Local algorithm.
final class	PcMb	Searches for a CPDAG representing all the Markov blankets for a given target T consistent with the given independence information.
class	PcStable	Implements the PC ("Peter/Clark") algorithm, as specified in Chapter 6 of Spirtes, Glymour, and Scheines, "Causation, Prediction, and Search," 2nd edition, with a modified rule set in step D due to Chris Meek.
class	PcStableMax	Implements a modification of the the PC ("Peter/Clark") algorithm, as specified in Chapter 6 of Spirtes, Glymour, and Scheines, Causation, Prediction, and Search, 2nd edition, using the rule set in step D due to Chris Meek.
final class	Rfci	Extends Erin Korber's implementation of the Fast Causal Inference algorithm (found in FCI.java) with Jiji Zhang's Augmented FCI rules (found in sec.
final class	SampleVcpc	Implements a conservative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	SampleVcpcFast	Implements a conservative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	SpFci	J.M.
final class	SvarFci	Extends Erin Korber's implementation of the Fast Causal Inference algorithm (found in FCI.java) with Jiji Zhang's Augmented FCI rules (found in sec.
final class	SvarGFci	Replaces the FAS search in the previous version with GES followed by PC adjacency removals for more accuracy.
final class	TimeSeriesLagSearch	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	TsFges2	GesSearch is an implementation of the GES algorithm, as specified in Chickering (2002) "Optimal structure identification with greedy search" Journal of Machine Learning Research.
final class	Vcpc	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	VcpcAlt	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.
final class	VcpcFast	Implements a convervative version of PC, in which the Markov condition is assumed but faithfulness is tested locally.

Uses of GraphSearch in edu.cmu.tetrad.search.mb

Classes in edu.cmu.tetrad.search.mb that implement GraphSearch

Modifier and Type	Class	Description
class	Mmhc	Implements the MMHC algorithm.

Uses of GraphSearch in edu.pitt.csb.mgm

Classes in edu.pitt.csb.mgm that implement GraphSearch

Modifier and Type	Class	Description
class	MGM	Implementation of Lee and Hastie's (2012) pseudolikelihood method for learning Mixed Gaussian-Categorical Graphical Models Created by ajsedgewick on 7/15/15.

Uses of GraphSearch in edu.pitt.dbmi.algo.bayesian.constraint.search

Classes in edu.pitt.dbmi.algo.bayesian.constraint.search that implement GraphSearch

Modifier and Type	Class	Description
class	PagSamplingRfci	Jan 29, 2023 4:10:52 PM
class	RfciBsc	Dec 17, 2018 3:28:15 PM