Package edu.cmu.tetrad.search

Class BdeuScoreImages

java.lang.Object
edu.cmu.tetrad.search.BdeuScoreImages
All Implemented Interfaces:
IBDeuScore, Score
public class BdeuScoreImages extends Object implements IBDeuScore
Implements the continuous BIC score for FGES.
Author:
Joseph Ramsey

  • Constructor Details

    • BdeuScoreImages

      public BdeuScoreImages(List<DataModel> dataModels)
      Constructs the score using a covariance matrix.

  • Method Details

    • localScoreDiff

      public double localScoreDiff(int x, int y, int[] z)
      Specified by:
      localScoreDiff in interface Score

    • localScoreDiff

      public double localScoreDiff(int x, int y)
      Specified by:
      localScoreDiff in interface Score

    • localScore

      public double localScore(int i, int[] parents)
      Calculates the sample likelihood and BIC score for i given its parents in a simple SEM model
      Specified by:
      localScore in interface Score
      Parameters:
      i - The index of the node.
      parents - The indices of the node's parents.
      Returns:
      The score, or NaN if the score cannot be calculated.

    • localScore

      public double localScore(int i, int[] parents, int index)

    • localScore

      public double localScore(int i, int parent)
      Specialized scoring method for a single parent. Used to speed up the effect edges search.
      Specified by:
      localScore in interface Score

    • localScore

      public double localScore(int i)
      Specialized scoring method for no parents. Used to speed up the effect edges search.
      Specified by:
      localScore in interface Score

    • isEffectEdge

      public boolean isEffectEdge(double bump)
      Specified by:
      isEffectEdge in interface Score

    • getDataSet

      public DataSet getDataSet()

    • isVerbose

      public boolean isVerbose()

    • setVerbose

      public void setVerbose(boolean verbose)

    • getVariables

      public List<Node> getVariables()
      Specified by:
      getVariables in interface Score

    • getSampleSize

      public int getSampleSize()
      Specified by:
      getSampleSize in interface Score

    • getSamplePrior

      public double getSamplePrior()
      Specified by:
      getSamplePrior in interface IBDeuScore

    • setSamplePrior

      public void setSamplePrior(double samplePrior)
      Specified by:
      setSamplePrior in interface IBDeuScore

    • getStructurePrior

      public double getStructurePrior()
      Specified by:
      getStructurePrior in interface IBDeuScore

    • setStructurePrior

      public void setStructurePrior(double structurePrior)
      Specified by:
      setStructurePrior in interface IBDeuScore

    • getVariable

      public Node getVariable(String targetName)
      Specified by:
      getVariable in interface Score

    • getMaxDegree

      public int getMaxDegree()
      Specified by:
      getMaxDegree in interface Score

    • determines

      public boolean determines(List<Node> z, Node y)
      Specified by:
      determines in interface Score

    • toString

      public String toString()
      Specified by:
      toString in interface Score
      Overrides:
      toString in class Object