Introduction

Participants

Papers

Links

Credits

REPORTS

First Year Report: Executive Summary

Full Report

NEWS:

(1) "Genome Wide Analysis of the Endothelial Transcriptome Under Short-Term Chronic Hypoxia". [abstract]

(2) "Identifying genes altered by a drug in temporal microarray data: A case study." Winnder, American Statistical Association 2003 Biopharm Student Paper Competition Award. [pdf]

(3) Influence of age, sex, and strength training on human muscle gene expression determined by microarray [abstract]

(4) Experiments on Accuracy of Algorithms for Inferring Structure of Regulatory Networks [pdf]

(5) Learning from SAGE Data [pdf]

(6) Analysis of Microarray Data for Treated Fat Cells [pdf]

Computational Systems Biology Group

Participants (Alphabetical order):

• Takis Benos
  • Assistant Professor, Graduate School of Public Health, University of Pittsburgh.
  • http://www.hgen.pitt.edu/~benos
  • benos@pitt.edu
• Tianjiao Chu
  • Ph.D. Program, Philosophy, Carnegie Mellon University.
  • tchu@andrew.cmu.edu
• Greg Cooper
  • Associate Professor of Medicine and Intelligent Systems and Senior Associate in the Center for Biomedical Informatics, University of Pittsburgh.
  • gfc@cbmi.upmc.edu
• Clark Glymour (P.I.)
  • Alumni University Professor, Philosophy Dept., Carnegie Mellon University and John Pace Scholar and Senior Research Scientist, Insititute for Human and Machine Cognition, University of West Florida.
  • cg09+@andrew.cmu.edu
• David Danks
  • Research Scientist, Institute for Human and Machine Cognition, University of West Florida
  • ddanks@ai.uwf.edu
• Dan Handley
  • Ph. D. Program, Graduate School of Public Health, Human Genetics, University of Pittsburgh and Department of Philosophy, Carnegie Mellon University.
  • dhandley@andrew.cmu.edu
• Subramani Mani
  • University of Pittsburgh.
  • mani@cbmi.upmc.edu
• Rob O'Doherty
  • Assistant Professor of Medicine and Molecular Genetics and Biochemistry.
  • ODohertyR@msx.dept-med.pitt.edu
• David Peters
  • Assistant Professor of Human Genetics, Graduate School of Public Health, Human Genetics, University of Pittsburgh.
  • dgp+@pitt.edu
• Joseph Ramsey
  • Director of Computing, Philosophy, Carnegie Mellon University.
  • http://www.andrew.cmu.edu/user/jdramsey/
  • jdramsey@andrew.cmu.edu
• Richard Scheines
• Associate Professor of Philosophy, Carnegie Mellon University.
• rscheines@andrew.cmu.edu
• Nicoleta Serban
  • Ph.D. Student, Statistics, Carnegie Mellon University
  • http://www.stat.cmu.edu/~nserban
  • nserban@andrew.cmu.edu
• Ricardo Silva
• Ph.D. Program, Center for Automated Learning and Discovery, Carnegie Mellon University.
• rbas@cs.cmu.edu
• Peter Spirtes
  • Professor, Philosophy, Carnegie Mellon University.
  • ps7z@andrew.cmu.edu
• Larry Wasserman
  • Professor, Statistics, Carnegie Mellon University.
  • larry@stat.cmu.edu
• Wei Wang
  • M.S. student Intelligence System Program, University of Pittsburgh
  • wew@cbmi.pitt.edu
• Frank Wimberly
  • Research Scientist, Institute for Human and Machine Cognition
  • wimberly3@earthlink.net
• Changwon Yoo
  • Virginia Tech
  • cwyoo@cbmi.upmc.edu

jdramsey@andrew.cmu.edu